Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMP05_RS17590 Genome accession   NZ_CP062910
Coordinates   3669936..3670403 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3664936..3675403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP05_RS17565 (IMP05_17570) rpsG 3665077..3665547 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  IMP05_RS17570 (IMP05_17575) fusA 3665644..3667758 (+) 2115 WP_000124700.1 elongation factor G -
  IMP05_RS17575 (IMP05_17580) tuf 3667829..3669013 (+) 1185 WP_000031783.1 elongation factor Tu -
  IMP05_RS17580 (IMP05_17585) bfd 3669196..3669390 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  IMP05_RS17585 (IMP05_17590) bfr 3669463..3669939 (+) 477 WP_000675515.1 bacterioferritin -
  IMP05_RS17590 (IMP05_17595) pilD 3669936..3670403 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  IMP05_RS17595 (IMP05_17600) rpsJ 3670782..3671093 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  IMP05_RS17600 (IMP05_17605) rplC 3671126..3671755 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  IMP05_RS17605 (IMP05_17610) rplD 3671766..3672371 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  IMP05_RS17610 (IMP05_17615) rplW 3672368..3672670 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  IMP05_RS17615 (IMP05_17620) rplB 3672688..3673509 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  IMP05_RS17620 (IMP05_17625) rpsS 3673526..3673804 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  IMP05_RS17625 (IMP05_17630) rplV 3673819..3674151 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  IMP05_RS17630 (IMP05_17635) rpsC 3674169..3674870 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  IMP05_RS17635 (IMP05_17640) rplP 3674883..3675293 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=435772 IMP05_RS17590 WP_000339836.1 3669936..3670403(-) (pilD) [Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=435772 IMP05_RS17590 WP_000339836.1 3669936..3670403(-) (pilD) [Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361