Detailed information NTG0435611

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HFD83_RS10090
• Genome accession: NZ_CP050916
• Coordinates: 2139568..2140269 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain DT-Ab003
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2134568..2145269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HFD83_RS10060 (HFD83_10060)	-	2134874..2135317 (-)	444	WP_001246675.1	SRPBCC family protein	-
HFD83_RS10065 (HFD83_10065)	tadA	2135387..2135890 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HFD83_RS10070 (HFD83_10070)	-	2135897..2137021 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HFD83_RS10075 (HFD83_10075)	ung	2137018..2137731 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
HFD83_RS10080 (HFD83_10080)	-	2137782..2138378 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HFD83_RS10085 (HFD83_10085)	gspK	2138609..2139568 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HFD83_RS10090 (HFD83_10090)	xcpW	2139568..2140269 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HFD83_RS10095 (HFD83_10095)	xcpV	2140269..2140649 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HFD83_RS10100 (HFD83_10100)	-	2140639..2141193 (-)	555	WP_000841373.1	type II secretion system protein	-
HFD83_RS10105 (HFD83_10105)	-	2141203..2141811 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HFD83_RS10110 (HFD83_10110)	-	2141849..2142622 (-)	774	WP_000497298.1	TatD family hydrolase	-
HFD83_RS10115 (HFD83_10115)	-	2142640..2142981 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
HFD83_RS10120 (HFD83_10120)	-	2142993..2143973 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HFD83_RS10125 (HFD83_10125)	kdsB	2143985..2144746 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=435611 HFD83_RS10090 WP_000594589.1 2139568..2140269(-) (xcpW) [Acinetobacter baumannii strain DT-Ab003]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=435611 HFD83_RS10090 WP_000594589.1 2139568..2140269(-) (xcpW) [Acinetobacter baumannii strain DT-Ab003]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996