Detailed information NTG0435517

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HFD81_RS10420
• Genome accession: NZ_CP050911
• Coordinates: 2190802..2191503 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain DT-Ab020
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2185802..2196503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HFD81_RS10390 (HFD81_10390)	-	2186108..2186551 (-)	444	WP_001246675.1	SRPBCC family protein	-
HFD81_RS10395 (HFD81_10395)	tadA	2186621..2187124 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HFD81_RS10400 (HFD81_10400)	-	2187131..2188255 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HFD81_RS10405 (HFD81_10405)	ung	2188252..2188965 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
HFD81_RS10410 (HFD81_10410)	-	2189016..2189612 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HFD81_RS10415 (HFD81_10415)	gspK	2189843..2190802 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HFD81_RS10420 (HFD81_10420)	xcpW	2190802..2191503 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HFD81_RS10425 (HFD81_10425)	xcpV	2191503..2191883 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HFD81_RS10430 (HFD81_10430)	-	2191873..2192427 (-)	555	WP_000841373.1	type II secretion system protein	-
HFD81_RS10435 (HFD81_10435)	-	2192437..2193045 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HFD81_RS10440 (HFD81_10440)	-	2193083..2193856 (-)	774	WP_000497298.1	TatD family hydrolase	-
HFD81_RS10445 (HFD81_10445)	-	2193874..2194215 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
HFD81_RS10450 (HFD81_10450)	-	2194227..2195207 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HFD81_RS10455 (HFD81_10455)	kdsB	2195219..2195980 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=435517 HFD81_RS10420 WP_000594589.1 2190802..2191503(-) (xcpW) [Acinetobacter baumannii strain DT-Ab020]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=435517 HFD81_RS10420 WP_000594589.1 2190802..2191503(-) (xcpW) [Acinetobacter baumannii strain DT-Ab020]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996