Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMP76_RS12140 Genome accession   NZ_CP062871
Coordinates   2431193..2431660 (+) Length   155 a.a.
NCBI ID   WP_096942433.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Lact-PEA14-20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2426193..2436660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP76_RS12095 (IMP76_12090) rplP 2426303..2426713 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  IMP76_RS12100 (IMP76_12095) rpsC 2426726..2427427 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  IMP76_RS12105 (IMP76_12100) rplV 2427445..2427777 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  IMP76_RS12110 (IMP76_12105) rpsS 2427792..2428070 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  IMP76_RS12115 (IMP76_12110) rplB 2428087..2428908 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  IMP76_RS12120 (IMP76_12115) rplW 2428926..2429228 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  IMP76_RS12125 (IMP76_12120) rplD 2429225..2429830 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  IMP76_RS12130 (IMP76_12125) rplC 2429841..2430470 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  IMP76_RS12135 (IMP76_12130) rpsJ 2430503..2430814 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  IMP76_RS12140 (IMP76_12135) pilD 2431193..2431660 (+) 468 WP_096942433.1 A24 family peptidase Machinery gene
  IMP76_RS12145 (IMP76_12140) bfr 2431657..2432133 (-) 477 WP_000675515.1 bacterioferritin -
  IMP76_RS12150 (IMP76_12145) bfd 2432206..2432400 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  IMP76_RS12155 (IMP76_12150) tuf 2432583..2433767 (-) 1185 WP_000031783.1 elongation factor Tu -
  IMP76_RS12160 (IMP76_12155) fusA 2433838..2435952 (-) 2115 WP_000124700.1 elongation factor G -
  IMP76_RS12165 (IMP76_12160) rpsG 2436049..2436519 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16965.11 Da        Isoelectric Point: 8.1296

>NTDB_id=435191 IMP76_RS12140 WP_096942433.1 2431193..2431660(+) (pilD) [Escherichia coli strain Res13-Lact-PEA14-20]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=435191 IMP76_RS12140 WP_096942433.1 2431193..2431660(+) (pilD) [Escherichia coli strain Res13-Lact-PEA14-20]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGCCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361