Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IMQ59_RS02135 Genome accession   NZ_CP062811
Coordinates   475325..475792 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain Res13-Sevr-PER07-33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470325..480792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ59_RS02110 (IMQ59_02110) rpsG 470466..470936 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  IMQ59_RS02115 (IMQ59_02115) fusA 471033..473147 (+) 2115 WP_000124700.1 elongation factor G -
  IMQ59_RS02120 (IMQ59_02120) tuf 473218..474402 (+) 1185 WP_000031783.1 elongation factor Tu -
  IMQ59_RS02125 (IMQ59_02125) bfd 474585..474779 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  IMQ59_RS02130 (IMQ59_02130) bfr 474852..475328 (+) 477 WP_000675515.1 bacterioferritin -
  IMQ59_RS02135 (IMQ59_02135) pilD 475325..475792 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  IMQ59_RS02140 (IMQ59_02140) rpsJ 476171..476482 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  IMQ59_RS02145 (IMQ59_02145) rplC 476515..477144 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  IMQ59_RS02150 (IMQ59_02150) rplD 477155..477760 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  IMQ59_RS02155 (IMQ59_02155) rplW 477757..478059 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  IMQ59_RS02160 (IMQ59_02160) rplB 478077..478898 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  IMQ59_RS02165 (IMQ59_02165) rpsS 478915..479193 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  IMQ59_RS02170 (IMQ59_02170) rplV 479208..479540 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  IMQ59_RS02175 (IMQ59_02175) rpsC 479558..480259 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  IMQ59_RS02180 (IMQ59_02180) rplP 480272..480682 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=434210 IMQ59_RS02135 WP_000381746.1 475325..475792(-) (pilD) [Escherichia coli strain Res13-Sevr-PER07-33]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=434210 IMQ59_RS02135 WP_000381746.1 475325..475792(-) (pilD) [Escherichia coli strain Res13-Sevr-PER07-33]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387