Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HCU65_RS08945 Genome accession   NZ_CP050705
Coordinates   1745303..1746082 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740303..1751082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS08925 (HCU65_08945) trmFO 1740998..1742305 (+) 1308 WP_219947608.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HCU65_RS08930 (HCU65_08950) xerC 1742372..1743286 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  HCU65_RS08935 (HCU65_08955) clpQ 1743300..1743845 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  HCU65_RS08940 (HCU65_08960) hslU 1743853..1745265 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  HCU65_RS08945 (HCU65_08965) codY 1745303..1746082 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HCU65_RS08950 (HCU65_08970) flgB 1746501..1746890 (+) 390 WP_003328950.1 flagellar basal body rod protein FlgB -
  HCU65_RS08955 (HCU65_08975) flgC 1746890..1747339 (+) 450 WP_219947609.1 flagellar basal body rod protein FlgC -
  HCU65_RS08960 (HCU65_08980) fliE 1747351..1747671 (+) 321 WP_219947610.1 flagellar hook-basal body complex protein FliE -
  HCU65_RS08965 (HCU65_08985) fliF 1747715..1749322 (+) 1608 WP_219947611.1 flagellar basal-body MS-ring/collar protein FliF -
  HCU65_RS08970 (HCU65_08990) fliG 1749335..1750351 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=434119 HCU65_RS08945 WP_003328951.1 1745303..1746082(+) (codY) [Bacillus atrophaeus strain PENSV20]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=434119 HCU65_RS08945 WP_003328951.1 1745303..1746082(+) (codY) [Bacillus atrophaeus strain PENSV20]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTGGTCAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATATACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTGATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCAATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCGCTCAGAAAGCTGGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471