Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HCU65_RS08915 Genome accession   NZ_CP050705
Coordinates   1737759..1738658 (+) Length   299 a.a.
NCBI ID   WP_106034119.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1732759..1743658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS08895 (HCU65_08915) - 1733409..1735157 (+) 1749 WP_219947606.1 hypothetical protein -
  HCU65_RS08900 (HCU65_08920) - 1735154..1735435 (+) 282 WP_219947607.1 FlhB-like flagellar biosynthesis protein -
  HCU65_RS08905 (HCU65_08925) sucC 1735609..1736766 (+) 1158 WP_003328959.1 ADP-forming succinate--CoA ligase subunit beta -
  HCU65_RS08910 (HCU65_08930) sucD 1736795..1737697 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  HCU65_RS08915 (HCU65_08935) dprA 1737759..1738658 (+) 900 WP_106034119.1 DNA-processing protein DprA Machinery gene
  HCU65_RS08920 (HCU65_08940) topA 1738847..1740922 (+) 2076 WP_013390513.1 type I DNA topoisomerase -
  HCU65_RS08925 (HCU65_08945) trmFO 1740998..1742305 (+) 1308 WP_219947608.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HCU65_RS08930 (HCU65_08950) xerC 1742372..1743286 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33175.21 Da        Isoelectric Point: 9.5634

>NTDB_id=434118 HCU65_RS08915 WP_106034119.1 1737759..1738658(+) (dprA) [Bacillus atrophaeus strain PENSV20]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPSWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPDTKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=434118 HCU65_RS08915 WP_106034119.1 1737759..1738658(+) (dprA) [Bacillus atrophaeus strain PENSV20]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCATCCAATTCACACCATCACTTCCGGTAAAATAAAAGCCGCCGCAC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTATCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATACCCGTCATGGCTGAAAACGATCTATGATCCACCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTCATAAAAGGCAGGAAAATTGGAGTGGTAGGTACGCGAAACCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGAAACCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGACACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGATTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCCGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCTGCTGAGGATATTTACAGTGAGTTATCGGAAGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.913

100

0.739