Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BACAU_RS08335 Genome accession   NC_016784
Coordinates   1657548..1658327 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis CAU B946     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652548..1663327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACAU_RS08315 (BACAU_1567) trmFO 1653235..1654542 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BACAU_RS08320 (BACAU_1568) xerC 1654612..1655529 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  BACAU_RS08325 (BACAU_1569) hslV 1655545..1656090 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BACAU_RS08330 (BACAU_1570) hslU 1656107..1657510 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  BACAU_RS08335 (BACAU_1571) codY 1657548..1658327 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BACAU_RS08340 (BACAU_1572) flgB 1658681..1659070 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BACAU_RS08345 (BACAU_1573) flgC 1659070..1659522 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  BACAU_RS08350 (BACAU_1574) fliE 1659533..1659853 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BACAU_RS08355 (BACAU_1575) fliF 1659896..1661506 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  BACAU_RS08360 (BACAU_1576) fliG 1661519..1662535 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BACAU_RS08365 (BACAU_1577) fliH 1662528..1663283 (+) 756 WP_014305003.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=43405 BACAU_RS08335 WP_003154263.1 1657548..1658327(+) (codY) [Bacillus velezensis CAU B946]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=43405 BACAU_RS08335 WP_003154263.1 1657548..1658327(+) (codY) [Bacillus velezensis CAU B946]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment