Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GM240_RS07710 Genome accession   NZ_CP050509
Coordinates   1589024..1591399 (+) Length   791 a.a.
NCBI ID   WP_098177924.1    Uniprot ID   A0AAX0RVK5
Organism   Peribacillus butanolivorans strain KJ40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1584024..1596399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS07695 (GM240_07700) spoVB 1584382..1585944 (-) 1563 WP_116820795.1 stage V sporulation protein B -
  GM240_RS07700 (GM240_07705) - 1586111..1586416 (+) 306 WP_057218863.1 post-transcriptional regulator -
  GM240_RS07705 (GM240_07710) secDF 1586617..1588878 (+) 2262 WP_098177925.1 protein translocase subunit SecDF -
  GM240_RS07710 (GM240_07715) recJ 1589024..1591399 (+) 2376 WP_098177924.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GM240_RS07715 (GM240_07720) - 1591390..1591902 (+) 513 WP_053347125.1 adenine phosphoribosyltransferase -
  GM240_RS07720 (GM240_07725) - 1592218..1594416 (+) 2199 WP_190271126.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GM240_RS07725 (GM240_07730) dtd 1594431..1594874 (+) 444 WP_190271127.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89166.73 Da        Isoelectric Point: 4.7886

>NTDB_id=433550 GM240_RS07710 WP_098177924.1 1589024..1591399(+) (recJ) [Peribacillus butanolivorans strain KJ40]
MLKPKTRWNLRTADENKVAELAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRVFGDYDADGVTSTTVMMTTLTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLASEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFEDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLKGENRLI
AAKGIEQLRLTRRPGLVALMKVANIQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSENLAEATELANEIDDINKE
RQAMVAAMAEEAIQEVEENYPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGHAKGSARSIAGFDLF
ESLSTCRELLPHFGGHPMAAGMTLKIEDVQELRDRMNMIAKEKLSEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDSENHKLDGVGFGLGHYVDEIAPHAEVSVIGELSINEWNNIKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLAEIPVHNRKIVIFSEDIYRRYPFLQNHPDLVLIKNEQEADQLDCMQGHVVLMDMPPL
RELLKRMIENKKPSRIYAHFSHEQDHFLSTVPTRDDFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTANAKKRDLSESESFIRKKEQFELEQELVYSSYQQLFDWFNHFLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=433550 GM240_RS07710 WP_098177924.1 1589024..1591399(+) (recJ) [Peribacillus butanolivorans strain KJ40]
ATGTTAAAGCCAAAAACACGGTGGAACTTACGAACTGCCGATGAAAACAAAGTTGCTGAACTAGCGGAAGAGCTTCATAT
CACACCCTTAGTTGCGGCCTTACTTGTGAATCGTGGCCTGGATACAATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTACTGAAAGATATGGATAAAGCAGTATATAGAATAAAAGAAGCCATTCAAAACGGA
GAGAAAATCAGGGTTTTTGGTGATTATGATGCGGACGGCGTGACATCGACTACGGTGATGATGACGACGCTAACTAGACT
AGGAGCCGATGTAGATTTTTATATCCCGAATCGGTTTACTGAGGGCTACGGTCCGAATCCAATGGCATTCCGCTTGGCAG
CTGAGCAAGGGGTAAAGGTATTAATAACCGTGGACACGGGAATTTCCGCAGTTGATGAAGCGAAACTTGCTAGCGAGCTT
GGCATGGATTATATTTTGACGGATCACCATGAACCGGGGCCGGAACTTCCCGAAGCACTAGCGATTATTCATCCAAAACT
TGAGGACAGTTCCTATCCATTTGAAGATCTTGCTGGCGTAGGGGTTGCTTTTAAACTGGCACATGCCTTGCTTGGCGAAC
TGCCAGAGGATTTGCTGGAGATTGCGGCTATCGGTACCATTGCGGATTTGGTACCTTTAAAAGGAGAAAACCGCCTCATT
GCAGCGAAAGGGATTGAGCAGTTACGCTTAACTAGACGTCCGGGGCTTGTTGCCCTAATGAAAGTGGCGAATATTCAGCA
GGAAGCATTGAATGAGGAATCAATCGGCTTTGCAATGGCACCACGAATCAATGCAGTTGGCCGCCTTGGTGATGCTGACC
CGGCTGTTGATTTATTGATGTCTGAAAACTTGGCAGAAGCGACGGAACTGGCTAATGAAATCGATGATATTAATAAAGAG
CGTCAGGCGATGGTTGCTGCAATGGCGGAAGAAGCGATTCAAGAGGTTGAGGAAAACTACCCACCGGAGTCAAATGGTGT
GCTTATTATCGGGAGAGAAGGCTGGAACGCAGGGGTAGTGGGTATTGTAGCCTCCAAACTGGTTGAACGCTTTTACCGTC
CGACCATTGTGTTGAGCTATGACCGAGAAAAGGGGCACGCGAAAGGTTCAGCCCGGAGTATTGCTGGATTCGACCTTTTT
GAGAGTCTCTCTACCTGTCGCGAATTGCTGCCTCATTTTGGTGGGCATCCGATGGCTGCGGGAATGACCCTGAAAATAGA
AGACGTACAGGAGCTTAGAGATCGCATGAACATGATTGCGAAAGAAAAGCTCAGCGAAGAAGATTTCACACCTATTACCA
ACTTGGATGGAGCCACAACATTAGCGGAAGTTTCCATTCAAACGATTCAGGAAATGAGCCTACTAGCGCCATTTGGAGTG
ACCAATCCAAAGCCGAAAATCTTGATAGATTCAGTCCAGCTTTCAAGTGTCCGTAAAATTGGCGCCAATCAGAATCACTT
GAAGGTGCAGCTTGAAGATAGTGAGAATCATAAACTCGACGGCGTTGGGTTTGGTCTAGGTCATTATGTGGATGAAATAG
CTCCGCATGCCGAAGTCTCCGTGATCGGCGAGCTTTCCATTAATGAGTGGAATAATATCAAAAAGCCGCAAATCTTTGTT
CAGGATGTCTCGGTCAATCATTGGCAGCTTTTCGATTATCGCGGCAAGGGACAGGCAGAGAAGTGGCTAGCTGAGATACC
GGTTCATAATCGGAAAATTGTTATTTTCTCAGAAGATATTTATAGAAGATATCCTTTTTTACAAAACCATCCCGATCTTG
TTTTAATCAAGAATGAACAGGAAGCAGATCAGCTCGACTGCATGCAAGGACATGTGGTTCTTATGGATATGCCCCCGTTA
AGAGAGTTGTTAAAACGGATGATTGAAAATAAGAAGCCGTCACGGATATACGCACATTTTTCTCATGAACAGGATCATTT
CTTAAGTACGGTGCCAACACGGGACGACTTTAAATGGTTCTATGCCTTTCTTGCTAAAAAGGGTCCGCTTGATGTGAAAA
GGTATGGTGATGATCTTGCCAAATACCGAGGCTGGTCAAGAGATACAGTGGATTTTATTTCAAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAGCCAATGCGAAAAAACGCGATCTCAGTGAGTCTGAATCGTT
TATAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTCTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTTTTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHHA1 domain (DHHA1)

(304-437)

RecJ OB domain (RecJ_OB)

(456-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.719

99.115

0.542