Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SCIM_RS07935 Genome accession   NC_018073
Coordinates   1635788..1637059 (+) Length   423 a.a.
NCBI ID   WP_003075857.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1630788..1642059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS10010 (SCIM_1433) - 1632460..1633203 (-) 744 WP_003076033.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SCIM_RS10015 (SCIM_1434) prmA 1633204..1634157 (-) 954 WP_331436699.1 50S ribosomal protein L11 methyltransferase -
  SCIM_RS07920 (SCIM_1435) - 1634301..1634771 (-) 471 WP_003076180.1 GNAT family N-acetyltransferase -
  SCIM_RS07925 (SCIM_1436) - 1634768..1635220 (-) 453 WP_003076137.1 NUDIX hydrolase -
  SCIM_RS07930 (SCIM_1437) - 1635230..1635700 (-) 471 WP_003075916.1 DUF3013 family protein -
  SCIM_RS07935 (SCIM_1438) rarA 1635788..1637059 (+) 1272 WP_003075857.1 replication-associated recombination protein A Machinery gene
  SCIM_RS09955 - 1637619..1637777 (+) 159 WP_165481409.1 hypothetical protein -
  SCIM_RS07945 (SCIM_1439) - 1637781..1638392 (+) 612 WP_003076049.1 hypothetical protein -
  SCIM_RS07950 (SCIM_1440) - 1638502..1638933 (+) 432 WP_003075838.1 Rrf2 family transcriptional regulator -
  SCIM_RS07955 (SCIM_1441) - 1639012..1640016 (+) 1005 WP_003076168.1 NADP-dependent oxidoreductase -
  SCIM_RS07960 (SCIM_1442) - 1640030..1640866 (+) 837 WP_003076214.1 alpha/beta fold hydrolase -
  SCIM_RS07965 (SCIM_1443) - 1640868..1641743 (+) 876 WP_003075876.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46801.40 Da        Isoelectric Point: 6.0213

>NTDB_id=43348 SCIM_RS07935 WP_003075857.1 1635788..1637059(+) (rarA) [Streptococcus intermedius JTH08]
MPENLALRMRPTGIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRTAIQ
LALTDKERGFDFPVELDDEALEIIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTAMEAAQRIGFPEARILIANIV
IDLALSPKSNSAYMAMDKALADLKKNGNLPIPRHLRDGHYTGSKELGNAQDYLYPHSYPGNWVKQDYLPDKIKDANYFTP
NQNGKYERALGMTKDKIDHLKKD

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=43348 SCIM_RS07935 WP_003075857.1 1635788..1637059(+) (rarA) [Streptococcus intermedius JTH08]
ATGCCAGAAAACCTCGCCCTACGCATGCGGCCGACCGGCATTGATCAGATTATCGGCCAGCAGCATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTATCCTCGATGATTCTCTACGGGCCACCGGGTATCGGCAAAACCT
CTATCGCCTCAGCTATCGCCGGCACGACCAAATATGCCTTTCGGACCTTTAACGCCACCGTAGATAGCAAGAAGCGTCTG
CAAGAGATCGCTGAAGAAGCGAAATTTTCCGGCGGTCTAGTTCTCCTGCTAGACGAGATTCACCGCTTGGACAAGACCAA
GCAAGACTTTCTGCTGCCGCTATTAGAAAGCGGTCTGGTCATCATGATTGGGGCGACGACAGAAAATCCATTTTTCTCGG
TGACACCCGCTATCCGAAGCCGAGTTCAGATATTTGAGCTGGAGCCCCTTAGCAACGACGACATCCGGACAGCCATCCAG
CTAGCCTTGACGGATAAGGAACGAGGATTTGATTTCCCAGTGGAGCTAGACGATGAGGCTCTGGAAATCATTGCCATCTC
TACCAACGGAGACCTGCGCTCCGCCTATAATTCACTGGACCTAGCCGTACTCTCTACTCCAGAAGATGACAAGGGCATCC
GCCATATTACACTTGATGTGATGGAGAACAGCCTGCAAAAGAGCTATATCACCATGGATAAGGACGGGGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAGAAGTCCATCCGTGGCTCCGATGTCAATGCTAGCCTCCACTACGCAGCTCGGCTCGTTGA
GGCAGGAGACCTGCCTAGCCTAGCTCGACGCCTGACCGTTATCGCTTACGAAGATATTGGTCTGGCAAATCCAGACGCTC
AAGTCCATACCGTTACAGCCATGGAAGCAGCCCAGCGGATTGGTTTTCCTGAAGCCCGCATCCTTATTGCCAATATTGTT
ATTGATCTAGCTCTATCGCCCAAGTCCAACTCAGCCTATATGGCCATGGATAAGGCCTTAGCCGACCTAAAAAAGAATGG
AAACTTGCCTATCCCCCGCCACTTACGAGACGGCCACTATACCGGCAGCAAGGAATTGGGCAATGCACAGGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGGTCAAGCAAGACTATCTGCCTGACAAGATAAAAGACGCCAATTATTTCACTCCA
AACCAAAATGGAAAGTACGAGCGAGCTCTTGGCATGACGAAAGATAAGATTGATCACCTCAAAAAAGACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.145

97.872

0.589

Multiple sequence alignment