Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCIM_RS06090 Genome accession   NC_018073
Coordinates   1252052..1253821 (-) Length   589 a.a.
NCBI ID   WP_003076994.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247052..1258821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS06060 - 1247296..1248143 (-) 848 Protein_1196 homoserine O-succinyltransferase -
  SCIM_RS06065 (SCIM_1094) - 1248248..1248760 (-) 513 WP_003076608.1 adenine phosphoribosyltransferase -
  SCIM_RS06070 (SCIM_1095) - 1248884..1249579 (-) 696 WP_003076265.1 LrgB family protein -
  SCIM_RS06075 (SCIM_1096) - 1249572..1249952 (-) 381 WP_003076913.1 CidA/LrgA family protein -
  SCIM_RS06085 (SCIM_1097) - 1250679..1251680 (+) 1002 WP_003076707.1 YdcF family protein -
  SCIM_RS06090 (SCIM_1098) rcrQ 1252052..1253821 (-) 1770 WP_003076994.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS06095 (SCIM_1099) - 1253831..1255567 (-) 1737 WP_003076797.1 ABC transporter ATP-binding protein -
  SCIM_RS06100 (SCIM_1100) endA 1255721..1256566 (-) 846 WP_003076919.1 DNA/RNA non-specific endonuclease Machinery gene
  SCIM_RS06105 - 1256629..1256805 (-) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SCIM_RS06110 (SCIM_1101) murA 1256798..1258078 (-) 1281 WP_003072160.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SCIM_RS09715 (SCIM_1102) - 1258116..1258346 (-) 231 WP_014829739.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66194.37 Da        Isoelectric Point: 5.3626

>NTDB_id=43324 SCIM_RS06090 WP_003076994.1 1252052..1253821(-) (rcrQ) [Streptococcus intermedius JTH08]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFWVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAISDLTYLLVAVVGGLQVISGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIRDFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIMDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=43324 SCIM_RS06090 WP_003076994.1 1252052..1253821(-) (rcrQ) [Streptococcus intermedius JTH08]
ATGAAACAACATAGTTTTATGCGTTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTAGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAACACAACATATGTTTTTTGGGTAATGGCACTTTACCTTTTGCGTGGT
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGGGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTACTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACCTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCATTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCGTATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AACCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCAATTTCAGATTTGAC
TTATCTGCTTGTAGCAGTTGTTGGTGGTTTGCAAGTCATTTCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTATGGCAAGTAAACCAACCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAACATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTTGAAAGCAAACCGCTCATTCGCGACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATCAATCTACTTATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGCAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTCAAGGATAATTTGCGTTTTGGAAATCTGAGTGCAACAGATGAAGAAA
TTATGGACGCTGCCAAAGCTGCTAATGTAGATCATTTCATTCGGACACTCCCAGGTGGCTATAATATGGAAATGAATCAG
GAATCTAGCAATATCTCGCTGGGGCAAAAACAATTATTGACCATTGCGCGAGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCAGTGGATACGCGCTTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACGAGCCAATTTGCTAAGAA
AGAAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-513)

ABC transporter transmembrane region (ABC_membrane)

(20-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.108

100

0.445

Multiple sequence alignment