Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB764_RS00795 Genome accession   NZ_CP050478
Coordinates   171847..172572 (-) Length   241 a.a.
NCBI ID   WP_029388870.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 166847..177572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS00770 (HB764_00770) - 168004..168495 (+) 492 WP_005430160.1 type II secretion system protein M -
  HB764_RS00775 (HB764_00775) - 168497..169258 (+) 762 WP_255957355.1 type II secretion system protein N -
  HB764_RS00780 (HB764_00780) cysQ 169548..170375 (-) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HB764_RS00785 (HB764_00785) nudE 170423..170989 (-) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  HB764_RS00790 (HB764_00790) nfuA 171165..171749 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  HB764_RS00795 (HB764_00795) comF 171847..172572 (-) 726 WP_029388870.1 ComF family protein Machinery gene
  HB764_RS00800 (HB764_00800) bioH 172657..173421 (+) 765 WP_255957356.1 pimeloyl-ACP methyl ester esterase BioH -
  HB764_RS00805 (HB764_00805) - 173557..174021 (+) 465 WP_255957358.1 ATP-dependent Lon protease -
  HB764_RS00810 (HB764_00810) - 174126..176447 (-) 2322 WP_005529110.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27684.85 Da        Isoelectric Point: 8.1508

>NTDB_id=433189 HB764_RS00795 WP_029388870.1 171847..172572(-) (comF) [Vibrio campbellii strain LJC011]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIERCMRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRLLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALRGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=433189 HB764_RS00795 WP_029388870.1 171847..172572(-) (comF) [Vibrio campbellii strain LJC011]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGATCACCTCACACCAATTGAGCGCTGCATGCGTTGTG
GTTTAAAAATGACAGAAGAGGAGTCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATAACAAGTGTGCCCGTTCACTGGCAGC
GCCTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAGGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACGAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACAGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

100

100

1
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465