Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB763_RS05750 Genome accession   NZ_CP050475
Coordinates   1228541..1229266 (-) Length   241 a.a.
NCBI ID   WP_255985569.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1223541..1234266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS05725 (HB763_05735) - 1224697..1225188 (+) 492 WP_005430160.1 type II secretion system protein M -
  HB763_RS05730 (HB763_05740) - 1225190..1225951 (+) 762 WP_228904549.1 type II secretion system protein N -
  HB763_RS05735 (HB763_05745) cysQ 1226242..1227069 (-) 828 WP_255985567.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HB763_RS05740 (HB763_05750) nudE 1227117..1227683 (-) 567 WP_255985568.1 ADP compounds hydrolase NudE -
  HB763_RS05745 (HB763_05755) nfuA 1227859..1228443 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  HB763_RS05750 (HB763_05760) comF 1228541..1229266 (-) 726 WP_255985569.1 ComF family protein Machinery gene
  HB763_RS05755 (HB763_05765) bioH 1229351..1230115 (+) 765 WP_255985570.1 pimeloyl-ACP methyl ester esterase BioH -
  HB763_RS05760 (HB763_05770) - 1230251..1230715 (+) 465 WP_005430182.1 hypothetical protein -
  HB763_RS05765 (HB763_05775) - 1230843..1233164 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27595.71 Da        Isoelectric Point: 8.1475

>NTDB_id=433161 HB763_RS05750 WP_255985569.1 1228541..1229266(-) (comF) [Vibrio campbellii strain LJC012]
MLSHQWQNIMHRVLSSQCGLCRFPMPQRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAGRVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=433161 HB763_RS05750 WP_255985569.1 1228541..1229266(-) (comF) [Vibrio campbellii strain LJC012]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
ACGCCAAACGCCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCATCTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGGGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.51

100

0.975
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465