Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB762_RS12440 Genome accession   NZ_CP050470
Coordinates   2629451..2630176 (+) Length   241 a.a.
NCBI ID   WP_255898648.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC013     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624451..2635176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS12425 (HB762_12330) - 2625576..2627897 (+) 2322 WP_255898644.1 Tex family protein -
  HB762_RS12430 (HB762_12335) - 2628002..2628466 (-) 465 WP_005430182.1 hypothetical protein -
  HB762_RS12435 (HB762_12340) bioH 2628602..2629366 (-) 765 WP_255898646.1 pimeloyl-ACP methyl ester esterase BioH -
  HB762_RS12440 (HB762_12345) comF 2629451..2630176 (+) 726 WP_255898648.1 ComF family protein Machinery gene
  HB762_RS12445 (HB762_12350) nfuA 2630274..2630858 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  HB762_RS12450 (HB762_12355) nudE 2631034..2631600 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  HB762_RS12455 (HB762_12360) cysQ 2631648..2632475 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HB762_RS12460 (HB762_12365) - 2632765..2633526 (-) 762 WP_255898650.1 type II secretion system protein N -
  HB762_RS12465 (HB762_12370) - 2633528..2634019 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27609.83 Da        Isoelectric Point: 8.1064

>NTDB_id=433103 HB762_RS12440 WP_255898648.1 2629451..2630176(+) (comF) [Vibrio campbellii strain LJC013]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLIRWCDSCFDHLTPIERCMRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVLHVGALTQLLAERVEQPAPVITSVPVHWQRLLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALRGEVDFSHVAIVDDVVTTGCTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=433103 HB762_RS12440 WP_255898648.1 2629451..2630176(+) (comF) [Vibrio campbellii strain LJC013]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATACGTTGGTGTGACAGCTGTTTTGATCACCTCACACCAATTGAGCGCTGCATGCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTTGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATAACAAGTGTGCCCGTTCACTGGCAGC
GCCTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACGAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTTGTACAGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

98.755

100

0.988
  comF Vibrio cholerae strain A1552

46.218

98.755

0.456