Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCIM_RS03995 Genome accession   NC_018073
Coordinates   831009..832757 (+) Length   582 a.a.
NCBI ID   WP_003077915.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 826009..837757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS03975 (SCIM_0711) yihA 826675..827262 (+) 588 WP_003068868.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SCIM_RS03980 (SCIM_0712) - 827385..828092 (+) 708 WP_003077899.1 glucosaminidase domain-containing protein -
  SCIM_RS03985 (SCIM_0713) - 828268..829065 (+) 798 WP_003077927.1 formate/nitrite transporter family protein -
  SCIM_RS03990 (SCIM_0714) - 829283..831019 (+) 1737 WP_003077883.1 ABC transporter ATP-binding protein -
  SCIM_RS03995 (SCIM_0715) rcrQ 831009..832757 (+) 1749 WP_003077915.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS04000 (SCIM_0716) - 832875..834410 (-) 1536 WP_003077886.1 ATP-binding cassette domain-containing protein -
  SCIM_RS04005 (SCIM_0717) - 834785..835525 (-) 741 WP_003072905.1 amino acid ABC transporter ATP-binding protein -
  SCIM_RS04010 (SCIM_0718) - 835525..837702 (-) 2178 WP_003077901.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65152.59 Da        Isoelectric Point: 7.0203

>NTDB_id=43308 SCIM_RS03995 WP_003077915.1 831009..832757(+) (rcrQ) [Streptococcus intermedius JTH08]
MKTRYSTSRLKRLANDLLQQRWLFLLATVGTIVQVVLTIYLPILIGEAIDSVLFPDAGRYLLPILSKMGIVIVANTVVQW
LNPLIYNQLIYSYSQQLCNAVIQKIHHLPLAYLDRQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTILVTIVTMAKI
DFFMMALVLLLTPLSMLIADFIARKSYKLFQKQTTARGLQTQFIEESLSQESLIQSFNAQEQFIANFTKGNESYADYSQE
AIFYSSTVNPATRFVNALIYAMIVGFGAARIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYTIL
DEKELVEIGKEELTSETVFGAIHFEHICFGYEKNKPLIHDLNMTIPAGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIK
LDDRDITNYTRMSFRQQFGMVLQETWLKKTTIHNNIAFGRPEASREEVIAAAKAANAHFFIQQLPNGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEVLIQKAFNKLMVGRTSFIIAHRLSTIQNADIILVLVDGDIVEHGSH
QDLMQAKGMYYQMQTVQGSLAI

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=43308 SCIM_RS03995 WP_003077915.1 831009..832757(+) (rcrQ) [Streptococcus intermedius JTH08]
ATGAAAACTAGATATTCTACAAGTAGGTTGAAGCGTCTAGCGAATGATTTATTACAACAACGTTGGCTTTTTCTGTTAGC
CACGGTTGGAACGATTGTTCAAGTTGTTTTGACAATTTATTTGCCGATTTTGATTGGCGAGGCTATTGATAGTGTTTTAT
TTCCTGATGCTGGTCGATATTTGCTTCCAATTCTTTCAAAAATGGGGATTGTAATTGTTGCCAATACAGTAGTTCAATGG
CTCAATCCTTTAATCTATAATCAGTTGATTTATAGTTATAGTCAGCAACTTTGTAATGCTGTCATTCAAAAAATTCATCA
TCTTCCCTTGGCTTATCTTGATCGTCAAGGAAGTGGTGATTTAGTGAGTCGCTTAACAACGGATGTGGAGCAGTTAAATA
ATGGGTTGCTCATGGTTTTTAATCAATTTTTTGTAGGTGTACTGACTATTCTTGTAACAATTGTGACAATGGCAAAGATT
GACTTTTTCATGATGGCATTGGTCTTGCTATTAACTCCCTTATCTATGCTGATTGCAGATTTTATCGCTCGTAAAAGCTA
CAAGTTGTTTCAAAAACAGACAACAGCTCGGGGGCTTCAGACACAATTTATCGAAGAAAGTCTCTCTCAGGAAAGTTTGA
TTCAAAGTTTTAATGCTCAGGAGCAGTTCATTGCGAACTTTACAAAGGGGAATGAAAGCTATGCGGATTATTCTCAGGAA
GCGATTTTCTATTCCTCGACTGTCAACCCAGCAACGCGTTTTGTAAATGCTCTTATCTATGCGATGATTGTAGGATTTGG
TGCAGCTCGTATCATCAATGGTTCCAGTTTTACAGTTGGACAATTAGTAACTTTCTTAAATTATGTGAACCAATATACTA
AACCATTTAACGACATTTCGTCTGTCATGGCCGAATTACAAAGCGCCCTTGCTTGTGCAGAACGCTTGTACACGATTTTA
GATGAAAAGGAACTTGTAGAAATTGGAAAAGAAGAACTTACGAGTGAGACTGTCTTTGGAGCTATTCATTTTGAACATAT
ATGTTTTGGTTATGAAAAAAACAAGCCCTTGATTCATGATTTAAATATGACCATTCCTGCGGGAAGCAAAGTTGCTATTG
TTGGGCCAACTGGCGCAGGAAAGTCTACCTTGATCAATCTTCTGATGCGCTTTTATAATGTGGATGCGGGCAAGATAAAG
CTAGACGATCGAGATATTACAAATTATACTCGAATGTCCTTCCGCCAGCAGTTTGGCATGGTGTTACAAGAAACGTGGCT
GAAAAAGACTACAATTCATAATAATATTGCTTTTGGGCGACCAGAAGCGAGTCGAGAAGAAGTGATAGCAGCTGCTAAAG
CAGCGAATGCACATTTTTTTATTCAGCAATTACCGAATGGTTATGACACTTATCTAGCGGACGCAGGTGACTCTTTATCA
CAAGGACAACGGCAGTTATTGACGATTGCGCGTGTTTTTCTAGCTGTACCTAAAATATTAATTTTAGACGAAGCAACTTC
ATCCATTGATACACGGACCGAAGTGCTTATTCAAAAAGCTTTTAATAAGCTAATGGTAGGAAGAACCAGTTTTATCATTG
CTCATCGTCTGTCTACTATTCAAAATGCAGATATCATCTTGGTTTTGGTTGATGGTGATATTGTCGAACATGGCAGTCAT
CAGGACTTGATGCAAGCGAAAGGTATGTATTATCAAATGCAGACAGTGCAGGGAAGTTTGGCTATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(25-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.446

99.313

0.392

Multiple sequence alignment