Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB761_RS06820 Genome accession   NZ_CP050467
Coordinates   1469101..1469826 (+) Length   241 a.a.
NCBI ID   WP_255940200.1    Uniprot ID   A0AAE9MXD9
Organism   Vibrio campbellii strain LJC014     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1464101..1474826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS06805 (HB761_06790) - 1465226..1467547 (+) 2322 WP_255940194.1 Tex family protein -
  HB761_RS06810 (HB761_06795) - 1467652..1468116 (-) 465 WP_005430182.1 hypothetical protein -
  HB761_RS06815 (HB761_06800) bioH 1468252..1469016 (-) 765 WP_255940198.1 pimeloyl-ACP methyl ester esterase BioH -
  HB761_RS06820 (HB761_06805) comF 1469101..1469826 (+) 726 WP_255940200.1 ComF family protein Machinery gene
  HB761_RS06825 (HB761_06810) nfuA 1469924..1470508 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  HB761_RS06830 (HB761_06815) nudE 1470684..1471250 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  HB761_RS06835 (HB761_06820) cysQ 1471298..1472125 (+) 828 WP_255940203.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HB761_RS06840 (HB761_06825) - 1472415..1473176 (-) 762 WP_255940205.1 type II secretion system protein N -
  HB761_RS06845 (HB761_06830) - 1473178..1473669 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 8.2963

>NTDB_id=433048 HB761_RS06820 WP_255940200.1 1469101..1469826(+) (comF) [Vibrio campbellii strain LJC014]
MLSHQWQNIMHRVLSSQCGLCRFPIPQRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTRLLAERVEQPASVITSVPVHWQRLLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALRGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=433048 HB761_RS06820 WP_255940200.1 1469101..1469826(+) (comF) [Vibrio campbellii strain LJC014]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTCCCCATACCTCA
ACGCCAAACGCCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCATCTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCATGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCGATTATTAGCAGAGCGAGTTGAGCAGCCTGCCTCAGTGATAACAAGTGTGCCCGTTCACTGGCAGC
GCCTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACGAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACAGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

98.34

100

0.983
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461