Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HB760_RS00515 Genome accession   NZ_CP050463
Coordinates   111465..112190 (-) Length   241 a.a.
NCBI ID   WP_256113510.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC015     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 106465..117190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS00490 (HB760_00490) - 107622..108113 (+) 492 WP_256113708.1 type II secretion system protein M -
  HB760_RS00495 (HB760_00495) - 108115..108876 (+) 762 WP_256113509.1 type II secretion system protein N -
  HB760_RS00500 (HB760_00500) cysQ 109166..109993 (-) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  HB760_RS00505 (HB760_00505) nudE 110041..110607 (-) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  HB760_RS00510 (HB760_00510) nfuA 110783..111367 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  HB760_RS00515 (HB760_00515) comF 111465..112190 (-) 726 WP_256113510.1 ComF family protein Machinery gene
  HB760_RS00520 (HB760_00520) bioH 112275..113039 (+) 765 WP_255898646.1 pimeloyl-ACP methyl ester esterase BioH -
  HB760_RS00525 (HB760_00525) - 113175..113639 (+) 465 WP_005430182.1 hypothetical protein -
  HB760_RS00530 (HB760_00530) - 113744..116065 (-) 2322 WP_255898644.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27593.77 Da        Isoelectric Point: 8.1508

>NTDB_id=432993 HB760_RS00515 WP_256113510.1 111465..112190(-) (comF) [Vibrio campbellii strain LJC015]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLIRWCDSCFDHLTPIERCMRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVLHVGALTQLLAERVEQPAPVITSVPVHWQRLLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALRGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=432993 HB760_RS00515 WP_256113510.1 111465..112190(-) (comF) [Vibrio campbellii strain LJC015]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATACGTTGGTGTGACAGCTGTTTTGATCACCTCACACCAATTGAGCGCTGCATGCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTTGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATAACAAGTGTGCCCGTTCACTGGCAGC
GCCTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACGAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACAGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

99.17

100

0.992
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461