Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HCC49_RS07935 Genome accession   NZ_CP050462
Coordinates   1554666..1555445 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Htq6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549666..1560445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS07915 (HCC49_07915) trmFO 1550353..1551660 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HCC49_RS07920 (HCC49_07920) xerC 1551730..1552647 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  HCC49_RS07925 (HCC49_07925) hslV 1552663..1553208 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HCC49_RS07930 (HCC49_07930) hslU 1553216..1554628 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  HCC49_RS07935 (HCC49_07935) codY 1554666..1555445 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HCC49_RS07940 (HCC49_07940) flgB 1555799..1556188 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HCC49_RS07945 (HCC49_07945) flgC 1556188..1556640 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HCC49_RS07950 (HCC49_07950) fliE 1556651..1556971 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HCC49_RS07955 (HCC49_07955) fliF 1557014..1558624 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  HCC49_RS07960 (HCC49_07960) fliG 1558637..1559653 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HCC49_RS07965 (HCC49_07965) fliH 1559646..1560401 (+) 756 WP_094246938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=432949 HCC49_RS07935 WP_003154263.1 1554666..1555445(+) (codY) [Bacillus velezensis strain Htq6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=432949 HCC49_RS07935 WP_003154263.1 1554666..1555445(+) (codY) [Bacillus velezensis strain Htq6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACTGTTGTAGGGATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471