Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SCIM_RS01125 Genome accession   NC_018073
Coordinates   224753..227107 (-) Length   784 a.a.
NCBI ID   WP_003077655.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 219753..232107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS01110 (SCIM_0188) - 219950..220666 (-) 717 WP_048785449.1 threonine/serine exporter family protein -
  SCIM_RS01115 (SCIM_0189) pflB 220827..223142 (-) 2316 WP_003074645.1 formate C-acetyltransferase -
  SCIM_RS01120 (SCIM_0190) dinB 223474..224538 (+) 1065 WP_003077853.1 DNA polymerase IV -
  SCIM_RS01125 (SCIM_0191) recD/recD2/recDB 224753..227107 (-) 2355 WP_003077655.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SCIM_RS01130 (SCIM_0192) lepB 227333..227947 (-) 615 WP_003077544.1 signal peptidase I -
  SCIM_RS01135 (SCIM_0193) rnhC 227951..228841 (-) 891 WP_003077692.1 ribonuclease HIII -
  SCIM_RS01140 (SCIM_0194) - 228927..229232 (+) 306 WP_003074635.1 hypothetical protein -
  SCIM_RS01145 (SCIM_0195) - 229229..229777 (+) 549 WP_003070931.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88527.69 Da        Isoelectric Point: 4.6930

>NTDB_id=43276 SCIM_RS01125 WP_003077655.1 224753..227107(-) (recD/recD2/recDB) [Streptococcus intermedius JTH08]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVANELAHLIEEDKVQHVDTKIFENSLFFAEERICNNLLRILEKGNQNKYEPENIEAAL
AQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGTLPIDFIEKKADRSYFEVRSEQIPQMIERIVEVAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQDLINPVVKEQLIFEATDGQYRQGDRVIHLVNDAESNVFNGDLGYITDLLPAKYADSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVQN
TGTTRKTYLLQRFANLPTDEKIMHTSMDDLKTSVEDYVLTEENFSKINPMIGLTEEDIHSIFGN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=43276 SCIM_RS01125 WP_003077655.1 224753..227107(-) (recD/recD2/recDB) [Streptococcus intermedius JTH08]
ATGGAATTTTACTTTTCAGGTACCATCGAACGCATTATCTTTGAAAATCCCAGCAGTTTTTTCCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGGGAAG
ACTATACCTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAATTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAGTACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
ATTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACACACCATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGATCCAAATTCCGTTGCAAATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAACATGTCGATACGAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAAA
GAATTTGCAACAATCTCTTACGCATTCTGGAGAAGGGAAATCAAAATAAATATGAACCAGAAAACATCGAAGCTGCGCTT
GCTCAAATCGAAGAAAAATTTGCTATTTCTTACGATGCGATTCAGAAGCAAGCTATTTGCGATGCTATCCAGCATAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACTGTTATCAATGGAATTATTGCTGTCTACGCGCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCCGCTCCAACTGGGCGTGCTGCTAGACGCATGAATGAA
TTAACAGGACTGCCAAGTGCGACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACCAGTCATTTAGACGATTA
TTTGGACGCAGATTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTACTCAGCAATATCT
CTTCCAATAGCAAGCTACTCATTGTCGGAGATGCCGACCAGCTACCCTCTGTCAGTCCTGGACAAGTGTTAGCAGATTTG
CTGAAAATCCCCCTCCTTCCACAGACCAAATTAGAAAAAATTTATCGGCAGGGCGAAGATTCCACGATCGTTACCTTAGC
TAGTCAGATTCAAAAAGGCACTCTGCCAATTGATTTCATTGAAAAAAAAGCAGATCGTTCTTATTTTGAAGTTCGTAGCG
AGCAGATTCCACAGATGATTGAACGCATTGTGGAAGTCGCTATCCGTAGTGGTATTCCAGCTCAAGATGTACAAGTACTT
GCTCCTATGTACCGTGGACAAGCAGGAATTGACCACATCAATCAACTCATGCAAGATCTGATCAATCCTGTTGTAAAAGA
ACAACTTATCTTTGAAGCTACTGATGGTCAATACCGACAAGGTGATCGGGTTATTCATCTCGTCAACGATGCTGAAAGCA
ATGTGTTCAACGGTGATTTGGGTTATATCACCGATTTACTACCAGCAAAATATGCTGATTCCAAGCAAGATGAACTGACT
ATCAATTTCGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTACAAGATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGCAGTGAATTTCCAGTCGTCATTTTACCGATTACGTCTAGCAGCCACCGCATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGCCTTTGCTGTCCAAAAT
ACTGGGACAACACGTAAAACCTATCTCCTTCAACGTTTTGCAAATCTACCAACAGATGAAAAAATAATGCACACTTCTAT
GGATGATTTGAAAACAAGCGTGGAAGACTATGTCTTGACTGAAGAAAATTTTTCGAAAATAAATCCTATGATCGGACTGA
CTGAAGAAGATATCCACAGTATCTTTGGCAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

AAA domain (AAA_30)

(331-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42

95.663

0.402

Multiple sequence alignment