Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HCG51_RS28445 Genome accession   NZ_CP050440
Coordinates   7120506..7121612 (+) Length   368 a.a.
NCBI ID   WP_167726254.1    Uniprot ID   -
Organism   Tolypothrix sp. PCC 7910     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7115506..7126612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG51_RS28430 (HCG51_28440) - 7116575..7117741 (+) 1167 WP_167726251.1 FIST signal transduction protein -
  HCG51_RS28435 (HCG51_28445) - 7117748..7118824 (+) 1077 WP_167726252.1 sensor histidine kinase -
  HCG51_RS28440 (HCG51_28450) - 7119063..7120364 (-) 1302 WP_167726253.1 sugar ABC transporter substrate-binding protein -
  HCG51_RS28445 (HCG51_28455) pilM 7120506..7121612 (+) 1107 WP_167726254.1 type IV pilus assembly protein PilM Machinery gene
  HCG51_RS28450 (HCG51_28460) - 7121617..7122408 (+) 792 WP_167726255.1 PilN domain-containing protein -
  HCG51_RS28455 (HCG51_28465) - 7122405..7123175 (+) 771 WP_167726256.1 pilus assembly protein PilO -
  HCG51_RS28460 (HCG51_28470) - 7123399..7125834 (+) 2436 WP_167726257.1 type IV pilus secretin family protein -
  HCG51_RS28465 (HCG51_28475) - 7126035..7126478 (+) 444 WP_167726258.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40533.57 Da        Isoelectric Point: 4.3979

>NTDB_id=432718 HCG51_RS28445 WP_167726254.1 7120506..7121612(+) (pilM) [Tolypothrix sp. PCC 7910]
MVKSFNSLFSKSNKGVGIELAPERVNIVQLRKQRQGLKVEALTSIPVPEGVMMDGQIADAPAMAQLIQQGLAESKIKASR
VATGVTGRDSIVRLIPVPAELDDKELREMVLNHEAALYLPYPREEADVDYQKLGYFVDEDGIEKVQVLLVATRKEVTESY
INTFEQAGLQIDVLEINSFAMIRTIRDQLRQFSPQEAAVLVDIEFDSSEIAIIVNGVPQFSRTVPIGTYQMQYALSKAMS
LPASRDMEMLYGMTIMTTNADGGKTGLTDINPGMAALLRVLGELTDELRRSIDFYLNQSENLEVAQIFLAGPGGGLQQLD
EFFTQRLSLPTAQIDPIASLSLEVSEEKYPVVQRAGLATVMGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=432718 HCG51_RS28445 WP_167726254.1 7120506..7121612(+) (pilM) [Tolypothrix sp. PCC 7910]
GTGGTGAAAAGCTTCAATAGTCTGTTTAGCAAATCTAATAAAGGGGTCGGTATTGAACTAGCACCAGAAAGGGTGAATAT
AGTTCAATTACGCAAACAACGTCAAGGCTTAAAAGTAGAAGCCTTAACATCAATACCAGTTCCCGAAGGTGTAATGATGG
ACGGTCAAATCGCTGATGCGCCAGCGATGGCCCAGTTAATCCAACAGGGTCTGGCTGAAAGCAAAATTAAAGCTTCTCGG
GTTGCTACTGGTGTAACAGGACGAGATTCAATCGTACGTTTAATACCTGTACCAGCAGAGTTAGATGATAAAGAACTGCG
AGAAATGGTGCTAAACCATGAAGCAGCTTTGTATTTACCCTATCCGCGTGAAGAAGCTGATGTGGATTATCAAAAACTTG
GGTACTTTGTAGATGAAGATGGTATTGAAAAAGTACAAGTACTTTTAGTAGCTACACGTAAGGAGGTAACGGAATCATAT
ATTAATACATTTGAGCAGGCAGGATTGCAAATCGATGTTTTAGAAATAAACAGCTTTGCAATGATTAGGACAATCCGCGA
TCAACTGCGGCAATTCAGCCCCCAAGAAGCAGCAGTATTGGTTGATATCGAATTTGACAGTTCCGAAATTGCCATTATTG
TCAACGGAGTACCGCAATTTTCACGCACTGTGCCTATCGGTACTTATCAAATGCAATATGCCCTCTCGAAGGCTATGAGT
TTACCTGCAAGCCGAGATATGGAAATGTTGTATGGCATGACGATTATGACAACGAATGCCGATGGGGGCAAAACTGGGCT
AACCGATATTAATCCGGGTATGGCAGCTTTATTAAGAGTTTTGGGGGAACTCACTGATGAACTGCGTCGTTCCATCGATT
TTTACCTAAATCAAAGTGAAAATCTGGAGGTAGCGCAAATTTTTTTAGCTGGCCCAGGCGGTGGCTTGCAACAGCTAGAT
GAGTTTTTCACCCAAAGATTAAGCTTACCAACTGCCCAAATCGATCCGATAGCATCTTTGTCCTTAGAGGTTAGTGAGGA
AAAATACCCTGTAGTACAACGCGCTGGTTTAGCGACAGTCATGGGTTTAGGAATGCGGGAGGTATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)

Type IV pilus assembly protein PilM; (PilM_2)

(17-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

65.123

99.728

0.649