Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BVELS4_RS08415 Genome accession   NZ_CP050424
Coordinates   1670289..1671068 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain S4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665289..1676068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVELS4_RS08395 (BVELS4_01682) trmFO 1665976..1667283 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BVELS4_RS08400 (BVELS4_01683) xerC 1667353..1668270 (+) 918 WP_015239850.1 tyrosine recombinase XerC -
  BVELS4_RS08405 (BVELS4_01684) hslV 1668286..1668831 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BVELS4_RS08410 (BVELS4_01685) hslU 1668848..1670251 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  BVELS4_RS08415 (BVELS4_01686) codY 1670289..1671068 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BVELS4_RS08420 (BVELS4_01687) flgB 1671422..1671811 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BVELS4_RS08425 (BVELS4_01688) flgC 1671811..1672263 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  BVELS4_RS08430 (BVELS4_01689) fliE 1672274..1672594 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BVELS4_RS08435 (BVELS4_01690) fliF 1672637..1674247 (+) 1611 WP_032871472.1 flagellar basal-body MS-ring/collar protein FliF -
  BVELS4_RS08440 (BVELS4_01691) fliG 1674260..1675276 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BVELS4_RS08445 (BVELS4_01692) fliH 1675269..1676024 (+) 756 WP_033574573.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=432557 BVELS4_RS08415 WP_003154263.1 1670289..1671068(+) (codY) [Bacillus velezensis strain S4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=432557 BVELS4_RS08415 WP_003154263.1 1670289..1671068(+) (codY) [Bacillus velezensis strain S4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471