Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SSUST1_RS05140 Genome accession   NC_017950
Coordinates   1033167..1034903 (-) Length   578 a.a.
NCBI ID   WP_014735890.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028167..1039903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS05120 (SSUST1_1032) thrB 1028171..1029031 (-) 861 WP_011922331.1 homoserine kinase -
  SSUST1_RS05125 (SSUST1_1033) - 1029035..1030321 (-) 1287 WP_014735888.1 homoserine dehydrogenase -
  SSUST1_RS05130 (SSUST1_1034) - 1030426..1031349 (+) 924 WP_014735889.1 polysaccharide deacetylase family protein -
  SSUST1_RS05135 (SSUST1_1035) - 1031477..1033158 (-) 1682 Protein_964 ABC transporter ATP-binding protein -
  SSUST1_RS05140 (SSUST1_1037) rcrP 1033167..1034903 (-) 1737 WP_014735890.1 ABC transporter ATP-binding protein Regulator
  SSUST1_RS05145 (SSUST1_1038) - 1034979..1035221 (-) 243 WP_012028079.1 KH domain-containing protein -
  SSUST1_RS05150 (SSUST1_1039) rpsP 1035243..1035515 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  SSUST1_RS05155 (SSUST1_1040) - 1035640..1035948 (-) 309 WP_014735891.1 DUF4298 domain-containing protein -
  SSUST1_RS05160 (SSUST1_1041) pcp 1035948..1036595 (-) 648 WP_014735892.1 pyroglutamyl-peptidase I -
  SSUST1_RS05165 (SSUST1_1042) - 1036592..1037347 (-) 756 WP_014735893.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65141.45 Da        Isoelectric Point: 5.1916

>NTDB_id=43233 SSUST1_RS05140 WP_014735890.1 1033167..1034903(-) (rcrP) [Streptococcus suis ST1]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALALLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRNKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=43233 SSUST1_RS05140 WP_014735890.1 1033167..1034903(-) (rcrP) [Streptococcus suis ST1]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGTATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACTACCAACATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTTATGCAATTCTCTGAAATGGTGTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGTCCTCTTTCTGAAAAGCAACAGAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATTATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCTTTTACAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATCTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAACAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAACAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCACAACGTGTTGGAACCATTATGG
ATGCCGACCAGATCATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCATAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAATTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.667

100

0.401

Multiple sequence alignment