Detailed information NTG0432312

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HBN34_RS10820
• Genome accession: NZ_CP050403
• Coordinates: 2260980..2261681 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain VB2486
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2255980..2266681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBN34_RS10790 (HBN34_10790)	-	2256287..2256730 (-)	444	WP_001246675.1	SRPBCC family protein	-
HBN34_RS10795 (HBN34_10795)	tadA	2256800..2257303 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
HBN34_RS10800 (HBN34_10800)	-	2257310..2258434 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBN34_RS10805 (HBN34_10805)	ung	2258431..2259144 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
HBN34_RS10810 (HBN34_10810)	-	2259195..2259791 (-)	597	WP_000908449.1	6-pyruvoyl trahydropterin synthase family protein	-
HBN34_RS10815 (HBN34_10815)	gspK	2260021..2260980 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
HBN34_RS10820 (HBN34_10820)	xcpW	2260980..2261681 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBN34_RS10825 (HBN34_10825)	xcpV	2261681..2262061 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBN34_RS10830 (HBN34_10830)	-	2262051..2262605 (-)	555	WP_000841373.1	type II secretion system protein	-
HBN34_RS10835 (HBN34_10835)	-	2262615..2263223 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBN34_RS10840 (HBN34_10840)	-	2263261..2264034 (-)	774	WP_114673903.1	TatD family hydrolase	-
HBN34_RS10845 (HBN34_10845)	-	2264052..2264393 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
HBN34_RS10850 (HBN34_10850)	-	2264405..2265385 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
HBN34_RS10855 (HBN34_10855)	kdsB	2265397..2266158 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=432312 HBN34_RS10820 WP_000594579.1 2260980..2261681(-) (xcpW) [Acinetobacter baumannii strain VB2486]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=432312 HBN34_RS10820 WP_000594579.1 2260980..2261681(-) (xcpW) [Acinetobacter baumannii strain VB2486]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983