Detailed information NTG0432265

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HBM82_RS10410
• Genome accession: NZ_CP050401
• Coordinates: 2181061..2181762 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain VB2181
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2176061..2186762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBM82_RS10380 (HBM82_10380)	-	2176367..2176810 (-)	444	WP_001246675.1	SRPBCC family protein	-
HBM82_RS10385 (HBM82_10385)	tadA	2176880..2177383 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HBM82_RS10390 (HBM82_10390)	-	2177390..2178514 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBM82_RS10395 (HBM82_10395)	ung	2178511..2179224 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
HBM82_RS10400 (HBM82_10400)	-	2179275..2179871 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HBM82_RS10405 (HBM82_10405)	gspK	2180102..2181061 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HBM82_RS10410 (HBM82_10410)	xcpW	2181061..2181762 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBM82_RS10415 (HBM82_10415)	xcpV	2181762..2182142 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBM82_RS10420 (HBM82_10420)	-	2182132..2182686 (-)	555	WP_000841373.1	type II secretion system protein	-
HBM82_RS10425 (HBM82_10425)	-	2182696..2183304 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBM82_RS10430 (HBM82_10430)	-	2183342..2184115 (-)	774	WP_000497298.1	TatD family hydrolase	-
HBM82_RS10435 (HBM82_10435)	-	2184133..2184474 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
HBM82_RS10440 (HBM82_10440)	-	2184486..2185466 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HBM82_RS10445 (HBM82_10445)	kdsB	2185478..2186239 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=432265 HBM82_RS10410 WP_000594589.1 2181061..2181762(-) (xcpW) [Acinetobacter baumannii strain VB2181]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=432265 HBM82_RS10410 WP_000594589.1 2181061..2181762(-) (xcpW) [Acinetobacter baumannii strain VB2181]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996