Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HBM80_RS16855 Genome accession   NZ_CP050400
Coordinates   3399721..3400362 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain VB11737     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394721..3405362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBM80_RS16835 (HBM80_16835) aroK 3395632..3396201 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HBM80_RS16840 (HBM80_16840) pilQ 3396213..3398378 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  HBM80_RS16845 (HBM80_16845) pilP 3398446..3398973 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HBM80_RS16850 (HBM80_16850) pilO 3398984..3399724 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBM80_RS16855 (HBM80_16855) pilN 3399721..3400362 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  HBM80_RS16860 (HBM80_16860) pilM 3400362..3401420 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HBM80_RS16865 (HBM80_16865) ponA 3401583..3404138 (+) 2556 WP_162200912.1 penicillin-binding protein PBP1a -
  HBM80_RS16870 (HBM80_16870) - 3404156..3404980 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  HBM80_RS16875 (HBM80_16875) - 3404983..3405315 (-) 333 WP_000169594.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=432236 HBM80_RS16855 WP_000201227.1 3399721..3400362(-) (pilN) [Acinetobacter baumannii strain VB11737]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=432236 HBM80_RS16855 WP_000201227.1 3399721..3400362(-) (pilN) [Acinetobacter baumannii strain VB11737]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709