NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	HBM78_RS10305	Genome accession	NZ_CP050390
Coordinates	2167671..2168372 (-)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	A0A9P3CZ31
Organism	Acinetobacter baumannii strain VB723
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2162671..2173372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBM78_RS10275 (HBM78_10275)	-	2162977..2163420 (-)	444	WP_001246675.1	SRPBCC family protein	-
HBM78_RS10280 (HBM78_10280)	tadA	2163490..2163993 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HBM78_RS10285 (HBM78_10285)	-	2164000..2165124 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBM78_RS10290 (HBM78_10290)	ung	2165121..2165834 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
HBM78_RS10295 (HBM78_10295)	-	2165885..2166481 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HBM78_RS10300 (HBM78_10300)	gspK	2166712..2167671 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HBM78_RS10305 (HBM78_10305)	xcpW	2167671..2168372 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBM78_RS10310 (HBM78_10310)	xcpV	2168372..2168752 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBM78_RS10315 (HBM78_10315)	-	2168742..2169296 (-)	555	WP_000841373.1	type II secretion system protein	-
HBM78_RS10320 (HBM78_10320)	-	2169306..2169914 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBM78_RS10325 (HBM78_10325)	-	2169952..2170725 (-)	774	WP_000497298.1	TatD family hydrolase	-
HBM78_RS10330 (HBM78_10330)	-	2170743..2171084 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
HBM78_RS10335 (HBM78_10335)	-	2171096..2172076 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HBM78_RS10340 (HBM78_10340)	kdsB	2172088..2172849 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=432171 HBM78_RS10305 WP_000594589.1 2167671..2168372(-) (xcpW) [Acinetobacter baumannii strain VB723]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=432171 HBM78_RS10305 WP_000594589.1 2167671..2168372(-) (xcpW) [Acinetobacter baumannii strain VB723]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0432171