Detailed information NTG0432127

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HBK89_RS09040
• Genome accession: NZ_CP050388
• Coordinates: 1860275..1860976 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain VB473
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1855275..1865976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBK89_RS09005 (HBK89_09005)	kdsB	1855798..1856559 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HBK89_RS09010 (HBK89_09010)	-	1856571..1857551 (+)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HBK89_RS09015 (HBK89_09015)	-	1857563..1857904 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
HBK89_RS09020 (HBK89_09020)	-	1857922..1858695 (+)	774	WP_000497298.1	TatD family hydrolase	-
HBK89_RS09025 (HBK89_09025)	-	1858733..1859341 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBK89_RS09030 (HBK89_09030)	-	1859351..1859905 (+)	555	WP_000841373.1	type II secretion system protein	-
HBK89_RS09035 (HBK89_09035)	xcpV	1859895..1860275 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBK89_RS09040 (HBK89_09040)	xcpW	1860275..1860976 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBK89_RS09045 (HBK89_09045)	gspK	1860976..1861935 (+)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HBK89_RS09050 (HBK89_09050)	-	1862166..1862762 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HBK89_RS09055 (HBK89_09055)	ung	1862813..1863526 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
HBK89_RS09060 (HBK89_09060)	-	1863523..1864647 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBK89_RS09065 (HBK89_09065)	tadA	1864654..1865157 (+)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HBK89_RS09070 (HBK89_09070)	-	1865227..1865670 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=432127 HBK89_RS09040 WP_000594589.1 1860275..1860976(+) (xcpW) [Acinetobacter baumannii strain VB473]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=432127 HBK89_RS09040 WP_000594589.1 1860275..1860976(+) (xcpW) [Acinetobacter baumannii strain VB473]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996