Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SSUST1_RS01840 Genome accession   NC_017950
Coordinates   352795..353583 (+) Length   262 a.a.
NCBI ID   WP_014735453.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 347795..358583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS11215 - 348685..350050 (+) 1366 Protein_315 Cof-type HAD-IIB family hydrolase -
  SSUST1_RS01825 (SSUST1_0351) tnpA 350215..350679 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  SSUST1_RS01830 (SSUST1_0352) - 350822..351274 (-) 453 WP_004195772.1 universal stress protein -
  SSUST1_RS01835 (SSUST1_0353) - 351429..352643 (+) 1215 WP_014735452.1 pyridoxal phosphate-dependent aminotransferase -
  SSUST1_RS01840 (SSUST1_0354) codY 352795..353583 (+) 789 WP_014735453.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SSUST1_RS01845 (SSUST1_0355) - 353596..354126 (+) 531 WP_029694707.1 cysteine hydrolase family protein -
  SSUST1_RS01850 (SSUST1_0356) rplS 354616..354963 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  SSUST1_RS01855 (SSUST1_0357) - 355149..355823 (+) 675 WP_012774968.1 hydrolase -
  SSUST1_RS01860 (SSUST1_0358) gatC 356040..356342 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SSUST1_RS01865 (SSUST1_0359) gatA 356342..357808 (+) 1467 WP_014735455.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29280.32 Da        Isoelectric Point: 4.6190

>NTDB_id=43203 SSUST1_RS01840 WP_014735453.1 352795..353583(+) (codY) [Streptococcus suis ST1]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVSLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=43203 SSUST1_RS01840 WP_014735453.1 352795..353583(+) (codY) [Streptococcus suis ST1]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGGTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTCGCGCAGGTTTATGATACGCAGGTTAGCTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGATGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489

Multiple sequence alignment