Detailed information NTG0043172

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: Y1U_RS09360
• Genome accession: NC_017927
• Coordinates: 1787042..1788310 (-)
• Length: 422 a.a.
• NCBI ID: WP_002952183.1
• Uniprot ID: Q5M295
• Organism: Streptococcus thermophilus MN-ZLW-002
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1782042..1793310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y1U_RS09335 (Y1U_Cp0061)	-	1782302..1783141 (+)	840	WP_224102952.1	radical SAM protein	-
Y1U_RS09340 (Y1U_C1848)	-	1783123..1784664 (+)	1542	WP_002948651.1	ATP-binding cassette domain-containing protein	-
Y1U_RS09345 (Y1U_Cp0062)	-	1785068..1785580 (-)	513	Protein_1780	helix-turn-helix domain-containing protein	-
Y1U_RS09350 (Y1U_C1849)	-	1785896..1786600 (+)	705	Protein_1781	site-specific integrase	-
Y1U_RS09360 (Y1U_C1850)	rarA	1787042..1788310 (-)	1269	WP_002952183.1	replication-associated recombination protein A	Machinery gene
Y1U_RS09365 (Y1U_C1851)	rpmB	1788480..1788668 (+)	189	WP_002952184.1	50S ribosomal protein L28	-
Y1U_RS09370 (Y1U_C1852)	-	1788795..1789061 (+)	267	WP_011681731.1	IreB family regulatory phosphoprotein	-
Y1U_RS09375 (Y1U_C1853)	ruvX	1789061..1789480 (+)	420	WP_011681732.1	Holliday junction resolvase RuvX	-
Y1U_RS09380 (Y1U_C1854)	-	1789589..1789894 (+)	306	WP_011681733.1	DUF1292 domain-containing protein	-
Y1U_RS09385 (Y1U_C1855)	-	1790107..1791753 (+)	1647	WP_014727752.1	membrane protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46419.92 Da
• Isoelectric Point: 6.8977

>NTDB_id=43172 Y1U_RS09360 WP_002952183.1 1787042..1788310(-) (rarA) [Streptococcus thermophilus MN-ZLW-002]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=43172 Y1U_RS09360 WP_002952183.1 1787042..1788310(-) (rarA) [Streptococcus thermophilus MN-ZLW-002]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCAAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCCTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

3D structure

• AlphaFold DB: Q5M295

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.666	99.289	0.592