Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HB752_RS08140 Genome accession   NZ_CP050271
Coordinates   1665556..1666482 (-) Length   308 a.a.
NCBI ID   WP_002267002.1    Uniprot ID   A0AAX1K1D7
Organism   Streptococcus mutans strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660556..1671482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS08130 (HB752_08130) gshAB 1661912..1664233 (+) 2322 WP_193388551.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  HB752_RS08135 (HB752_08135) - 1664310..1664912 (-) 603 WP_002276207.1 nitroreductase family protein -
  HB752_RS08140 (HB752_08140) amiF 1665556..1666482 (-) 927 WP_002267002.1 ATP-binding cassette domain-containing protein Regulator
  HB752_RS08145 (HB752_08145) oppD 1666475..1667527 (-) 1053 WP_002267833.1 ABC transporter ATP-binding protein Regulator
  HB752_RS08150 (HB752_08150) - 1667537..1668568 (-) 1032 WP_002263989.1 ABC transporter permease -
  HB752_RS08155 (HB752_08155) - 1668579..1669493 (-) 915 WP_002262739.1 ABC transporter permease -
  HB752_RS08160 (HB752_08160) - 1669599..1671248 (-) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34842.97 Da        Isoelectric Point: 7.3331

>NTDB_id=431142 HB752_RS08140 WP_002267002.1 1665556..1666482(-) (amiF) [Streptococcus mutans strain S1]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=431142 HB752_RS08140 WP_002267002.1 1665556..1666482(-) (amiF) [Streptococcus mutans strain S1]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCTATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTTGAAGGCGAAACGATTTCAAAATTA
AAGGGAAAGTCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552