Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VEJY3_RS15755 Genome accession   NC_016613
Coordinates   3454681..3456204 (-) Length   507 a.a.
NCBI ID   WP_014233401.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3449681..3461204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS15735 (VEJY3_15375) - 3450909..3451895 (+) 987 WP_014233397.1 serine/threonine protein kinase -
  VEJY3_RS15740 (VEJY3_15380) - 3451929..3452531 (+) 603 WP_014233398.1 thiol:disulfide interchange protein DsbA/DsbL -
  VEJY3_RS15745 (VEJY3_15385) - 3452575..3453453 (-) 879 WP_014233399.1 acyltransferase -
  VEJY3_RS15750 (VEJY3_15390) - 3453693..3454649 (+) 957 WP_014233400.1 DUF2860 domain-containing protein -
  VEJY3_RS15755 (VEJY3_15395) comM 3454681..3456204 (-) 1524 WP_014233401.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VEJY3_RS15760 (VEJY3_15400) ilvG 3456672..3458318 (+) 1647 WP_014233402.1 acetolactate synthase 2 catalytic subunit -
  VEJY3_RS15765 (VEJY3_15405) ilvM 3458330..3458614 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  VEJY3_RS15770 (VEJY3_15410) ilvD 3458782..3460623 (+) 1842 WP_014233404.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55075.04 Da        Isoelectric Point: 8.2033

>NTDB_id=43114 VEJY3_RS15755 WP_014233401.1 3454681..3456204(-) (comM) [Vibrio sp. EJY3]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLHKSPKRKTTESHNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQSEVDEHNWKIRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTVVVKERVNDARQQMLSRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEEQ
IERAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=43114 VEJY3_RS15755 WP_014233401.1 3454681..3456204(-) (comM) [Vibrio sp. EJY3]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGTGTACAAGCGCCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTCTGGTCGGGCTGCCAGAAACCACGGTAAAAGAATCAAAGGATCGTGTACGTAGTGCCATTA
TCAATTCCAATTTTCAATTTCCTGCCAAACGCATTACGGTCAACTTAGCTCCGGCGGATTTACCCAAAGAGGGCGGACGC
TTTGACTTACCCATAGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCATTGTCTGGAGGCTTAAGACCAGTAAAAGGGGTGCTACCTGCCGCACTCGCTGCAAGCAAGTTTCAGC
GCCATTTGGTCGTGCCACATGTGAATGGTGATCAGGCGGCGTTGGTAGGTAAAGAACAGCATAAATCCGCTCAGTCGCTG
CTTGAGGTGTGTGCTGAATTGTGTGGTCAACATCGGCTTAATCTGCATAAATCACCTAAGCGTAAAACAACAGAAAGCCA
TAACCGAGATTTACAGGACATCATTGGCCAGCAACAGGGTAAGCGAGCGCTTGAGATTGCTGCAGCAGGAAACCATAACT
TACTTTTCCTTGGACCGCCGGGAACAGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTGTTACCTGAAATGAGTGAT
GATGAAGCGATGGAAACCGCATCCGTCGCGTCATTAACACAAAGCGAAGTCGATGAGCATAACTGGAAGATACGGCCGTT
TCGTTCTCCACACCACTCCAGTTCTATGGCGGCTTTAGTCGGCGGAGGTTCGGTTCCGAGGCCGGGAGAAATTTCTCTGG
CTCACAATGGCTTGTTGTTTCTGGATGAAATGCCGGAGTTCGATCGCAAGGTGCTGGATTCGCTGCGAGAACCGCTGGAG
TCAGGCGAAATAATCATCTCCCGGGCTCAGGGCAAAACACGATTTCCTGCCCGTTTTCAGCTGGTGGGCGCTCTCAACCC
CAGCCCGACTGGCTACTACGAAGGCAATCAAGCACGTACCAATCCACAAGCCATTCTGCGTTATTTAGGTCGTCTGTCGG
GACCGCTACTCGATCGATTCGATATGTCTCTGGAAATTCCTGCTTTGCCAAAGGGCACATTATCTGAGGGTGGGGACCGC
GGTGAGCCAACAGTGGTTGTGAAAGAGCGCGTTAATGACGCACGTCAGCAGATGTTAAGTCGCAGCGGTAAGGTGAACGC
TTTGCTGGGTAGTCGTGAGATAGAAGCGTTTTGCCCGTTACAAAAAAGTGATGCAGAGTTTCTGGAGACAGCTTTACATA
GACTGGGACTGTCCATTCGTGCGTATCACCGAATCATTAAAGTTGCCCGCACTATTGCCGATCTGGATGGGGAAGAGCAG
ATTGAGCGCGCCCATCTGGCGGAAGCCCTTGGATATCGAGCAATGGACCGATTACTGAAACAGCTTACTGCTCAGGCTGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.688

100

0.937
  comM Vibrio cholerae strain A1552

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.401

100

0.446

Multiple sequence alignment