Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HB752_RS05085 Genome accession   NZ_CP050271
Coordinates   1008065..1009867 (-) Length   600 a.a.
NCBI ID   WP_019804752.1    Uniprot ID   -
Organism   Streptococcus mutans strain S1     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1006321..1040167 1008065..1009867 within 0


Gene organization within MGE regions


Location: 1006321..1040167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS05080 (HB752_05080) rcrQ 1006321..1008075 (-) 1755 WP_019804753.1 ABC transporter ATP-binding protein Regulator
  HB752_RS05085 (HB752_05085) rcrP 1008065..1009867 (-) 1803 WP_019804752.1 ABC transporter ATP-binding protein Regulator
  HB752_RS05090 (HB752_05090) rcrR 1009871..1010305 (-) 435 WP_019804751.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HB752_RS05095 (HB752_05095) queC 1010858..1011511 (+) 654 WP_019804749.1 7-cyano-7-deazaguanine synthase QueC -
  HB752_RS05100 (HB752_05100) queD 1011511..1011957 (+) 447 WP_002281982.1 6-carboxytetrahydropterin synthase QueD -
  HB752_RS05105 (HB752_05105) queE 1011954..1012670 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  HB752_RS05110 (HB752_05110) queF 1012683..1013171 (+) 489 WP_002263288.1 preQ(1) synthase -
  HB752_RS05115 (HB752_05115) - 1013280..1013663 (+) 384 WP_002298133.1 DUF3021 family protein -
  HB752_RS05120 (HB752_05120) gdhA 1013773..1015122 (-) 1350 WP_019804748.1 NADP-specific glutamate dehydrogenase -
  HB752_RS05125 (HB752_05125) - 1015653..1016159 (+) 507 WP_019804747.1 DUF308 domain-containing protein -
  HB752_RS05130 (HB752_05130) gtfD 1016382..1020770 (-) 4389 WP_019804746.1 glucosyltransferase-S -
  HB752_RS05135 (HB752_05135) - 1020991..1021911 (-) 921 WP_002266551.1 AEC family transporter -
  HB752_RS05140 (HB752_05140) - 1022027..1023799 (-) 1773 WP_019804745.1 ABC transporter ATP-binding protein -
  HB752_RS05145 (HB752_05145) - 1023810..1025546 (-) 1737 WP_019804744.1 ABC transporter ATP-binding protein -
  HB752_RS05150 (HB752_05150) - 1026002..1027870 (-) 1869 WP_019804743.1 ABC-F family ATP-binding cassette domain-containing protein -
  HB752_RS05155 (HB752_05155) - 1027873..1029078 (-) 1206 WP_002288861.1 CCA tRNA nucleotidyltransferase -
  HB752_RS05160 (HB752_05160) dapB 1029075..1029842 (-) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  HB752_RS05165 (HB752_05165) - 1029854..1030699 (-) 846 WP_002266545.1 DegV family protein -
  HB752_RS05170 (HB752_05170) - 1030705..1031079 (-) 375 WP_002262891.1 DUF1149 family protein -
  HB752_RS05175 (HB752_05175) - 1031188..1032729 (-) 1542 WP_167311837.1 hypothetical protein -
  HB752_RS05180 (HB752_05180) - 1032716..1033432 (-) 717 WP_167311838.1 ABC transporter ATP-binding protein -
  HB752_RS05185 (HB752_05185) - 1033507..1034112 (-) 606 WP_167311839.1 TetR/AcrR family transcriptional regulator -
  HB752_RS05190 (HB752_05190) - 1034275..1034778 (-) 504 WP_002269391.1 phosphatase PAP2 family protein -
  HB752_RS05195 (HB752_05195) - 1035020..1036099 (-) 1080 WP_002262882.1 serine hydrolase -
  HB752_RS05200 (HB752_05200) galE 1036365..1037366 (-) 1002 WP_025998753.1 UDP-glucose 4-epimerase GalE -
  HB752_RS05205 (HB752_05205) galT 1037515..1038990 (-) 1476 WP_019804741.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  HB752_RS05210 (HB752_05210) - 1038995..1040167 (-) 1173 WP_019804740.1 galactokinase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66953.79 Da        Isoelectric Point: 9.6602

>NTDB_id=431124 HB752_RS05085 WP_019804752.1 1008065..1009867(-) (rcrP) [Streptococcus mutans strain S1]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKSLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGEIVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQNYSHDDLNNKVGYIPQRAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKDFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=431124 HB752_RS05085 WP_019804752.1 1008065..1009867(-) (rcrP) [Streptococcus mutans strain S1]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAACCGAGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCTGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAGCCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGATAGTTGCTTTTATTGGCTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGCATCAAAGTGCAAAATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAGGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAATTAGCCCAAGCCAAAGATTTTGTTGAAGAAAAAGAAAAGGGA
CTTGATACTGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAACGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTAGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTG
GTCTTAGATCAAGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

99.333

100

0.993