Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ILP78_RS06595 Genome accession   NZ_CP062465
Coordinates   1307491..1308765 (-) Length   424 a.a.
NCBI ID   WP_000102735.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1302491..1313765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP78_RS06570 (ILP78_06570) hisS 1303052..1304314 (+) 1263 WP_000590824.1 histidine--tRNA ligase -
  ILP78_RS06575 (ILP78_06575) aspS 1304330..1306096 (+) 1767 WP_194085683.1 aspartate--tRNA ligase -
  ILP78_RS06585 (ILP78_06585) - 1306429..1306557 (+) 129 WP_001808039.1 hypothetical protein -
  ILP78_RS06590 (ILP78_06590) - 1306557..1307330 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  ILP78_RS06595 (ILP78_06595) rarA 1307491..1308765 (-) 1275 WP_000102735.1 replication-associated recombination protein A Machinery gene
  ILP78_RS06600 (ILP78_06600) cymR 1308850..1309272 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  ILP78_RS06605 (ILP78_06605) - 1309372..1309554 (+) 183 WP_000752909.1 CsbD family protein -
  ILP78_RS06610 (ILP78_06610) - 1309594..1309740 (+) 147 WP_000009238.1 SAS049 family protein -
  ILP78_RS06615 (ILP78_06615) - 1309977..1310990 (-) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  ILP78_RS06620 (ILP78_06620) - 1311302..1312444 (+) 1143 WP_000409167.1 cysteine desulfurase family protein -
  ILP78_RS06625 (ILP78_06625) mnmA 1312445..1313563 (+) 1119 WP_000066105.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47250.81 Da        Isoelectric Point: 8.3539

>NTDB_id=431037 ILP78_RS06595 WP_000102735.1 1307491..1308765(-) (rarA) [Staphylococcus aureus strain MRSA - AMRF 6]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=431037 ILP78_RS06595 WP_000102735.1 1307491..1308765(-) (rarA) [Staphylococcus aureus strain MRSA - AMRF 6]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684