Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VEJY3_RS00725 Genome accession   NC_016613
Coordinates   156820..157542 (-) Length   240 a.a.
NCBI ID   WP_041170186.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151820..162542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS00700 (VEJY3_00655) - 152998..153489 (+) 492 WP_041170184.1 type II secretion system protein M -
  VEJY3_RS00705 (VEJY3_00660) - 153491..154252 (+) 762 WP_041170185.1 type II secretion system protein N -
  VEJY3_RS00710 (VEJY3_00665) cysQ 154537..155364 (-) 828 WP_014230544.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VEJY3_RS00715 (VEJY3_00670) nudE 155409..155978 (-) 570 WP_014230545.1 ADP compounds hydrolase NudE -
  VEJY3_RS00720 (VEJY3_00675) nfuA 156139..156723 (-) 585 WP_014230546.1 Fe-S biogenesis protein NfuA -
  VEJY3_RS00725 (VEJY3_00680) comF 156820..157542 (-) 723 WP_041170186.1 amidophosphoribosyltransferase Machinery gene
  VEJY3_RS00730 (VEJY3_00685) bioH 157627..158394 (+) 768 WP_014230548.1 pimeloyl-ACP methyl ester esterase BioH -
  VEJY3_RS00735 (VEJY3_00690) - 158506..158970 (+) 465 WP_014230549.1 hypothetical protein -
  VEJY3_RS00740 (VEJY3_00695) - 159053..161383 (-) 2331 WP_014230550.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27734.05 Da        Isoelectric Point: 8.8563

>NTDB_id=43075 VEJY3_RS00725 WP_041170186.1 156820..157542(-) (comF) [Vibrio sp. EJY3]
MLSHHWQNIMYRVLGSQCGLCRLPLKITQPPNALRWCSHCFQYLNPIRRCQHCGLVMQETERSDTVCGECLAEPPPWQRL
ITLGDYAFPLSREVQRFKDHGESWHVEELTRLLAARISSPATLITSVPLHWRRYLSRGFNQSDVLARHLAAHLHRHFDPK
VFRRIQYADSQRGHTKTQREQNLQGAFILNKKPMYKHVAIVDDVVTTGSTVRQLCQLLLEVGVESIDIYCICRTPAPTSL

Nucleotide


Download         Length: 723 bp        

>NTDB_id=43075 VEJY3_RS00725 WP_041170186.1 156820..157542(-) (comF) [Vibrio sp. EJY3]
ATGTTATCTCATCACTGGCAAAACATCATGTATCGCGTGCTCGGTAGCCAATGTGGTCTGTGCAGGCTGCCACTGAAAAT
AACACAGCCGCCTAACGCTCTTCGTTGGTGTAGCCATTGTTTTCAGTATCTTAATCCGATTAGAAGGTGCCAACATTGCG
GTTTGGTTATGCAGGAAACAGAAAGGAGCGACACGGTGTGTGGCGAGTGCTTGGCCGAACCACCGCCCTGGCAGCGACTC
ATCACTCTCGGTGACTATGCGTTTCCTCTGTCACGCGAGGTTCAGCGCTTTAAAGATCATGGCGAGAGTTGGCACGTAGA
AGAATTAACGCGATTGCTCGCGGCGCGCATTTCTTCTCCAGCGACACTGATTACCAGCGTTCCACTGCACTGGCGACGCT
ATTTATCGCGTGGGTTCAATCAAAGTGATGTACTTGCCAGACACTTGGCAGCCCATCTGCATCGCCATTTTGACCCTAAA
GTATTTCGTCGTATCCAATACGCAGACTCTCAGAGAGGCCATACTAAAACCCAACGAGAGCAAAACTTGCAAGGTGCGTT
TATCCTCAATAAAAAGCCGATGTATAAACACGTGGCGATTGTCGATGATGTCGTCACAACGGGCAGTACGGTACGACAAT
TATGCCAATTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTACTTCGCTC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

68.05

100

0.683
  comF Vibrio cholerae strain A1552

50.211

98.75

0.496

Multiple sequence alignment