Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IF723_RS03945 Genome accession   NZ_CP062414
Coordinates   789266..790039 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NAS_AN_175     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 784266..795039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF723_RS03910 (IF723_03885) - 784519..785289 (-) 771 WP_000473699.1 isoprenyl transferase -
  IF723_RS03915 (IF723_03890) frr 785662..786216 (-) 555 WP_001280006.1 ribosome recycling factor -
  IF723_RS03920 (IF723_03895) pyrH 786235..786957 (-) 723 WP_000057330.1 UMP kinase -
  IF723_RS03925 (IF723_03900) tsf 787094..787975 (-) 882 WP_000201387.1 translation elongation factor Ts -
  IF723_RS03930 (IF723_03905) - 788010..788123 (-) 114 WP_001789890.1 hypothetical protein -
  IF723_RS03935 (IF723_03910) rpsB 788157..788924 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  IF723_RS03940 (IF723_03915) - 789123..789215 (-) 93 WP_031788481.1 hypothetical protein -
  IF723_RS03945 (IF723_03920) codY 789266..790039 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IF723_RS03950 (IF723_03925) hslU 790064..791467 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  IF723_RS03955 (IF723_03930) hslV 791533..792078 (-) 546 WP_240100873.1 ATP-dependent protease subunit HslV -
  IF723_RS03960 (IF723_03935) xerC 792075..792971 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  IF723_RS03965 (IF723_03940) trmFO 793388..794695 (-) 1308 WP_000195258.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=430241 IF723_RS03945 WP_000055337.1 789266..790039(-) (codY) [Staphylococcus aureus strain NAS_AN_175]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=430241 IF723_RS03945 WP_000055337.1 789266..790039(-) (codY) [Staphylococcus aureus strain NAS_AN_175]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGATAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428