Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   G8O81_RS09520 Genome accession   NZ_CP050129
Coordinates   1840678..1842369 (+) Length   563 a.a.
NCBI ID   WP_014600810.1    Uniprot ID   A0A3Q0NEF3
Organism   Listeria monocytogenes strain MB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835678..1847369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8O81_RS09490 - 1835688..1835915 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  G8O81_RS09495 - 1835918..1836799 (+) 882 WP_014600808.1 polyprenyl synthetase family protein -
  G8O81_RS09500 - 1836998..1837198 (+) 201 WP_003719639.1 cold-shock protein -
  G8O81_RS09505 dxs 1837365..1839194 (+) 1830 WP_003733809.1 1-deoxy-D-xylulose-5-phosphate synthase -
  G8O81_RS09510 - 1839191..1840015 (+) 825 WP_014600809.1 TlyA family RNA methyltransferase -
  G8O81_RS09515 ahrC 1840206..1840655 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  G8O81_RS09520 recN 1840678..1842369 (+) 1692 WP_014600810.1 DNA repair protein RecN Machinery gene
  G8O81_RS09525 - 1842497..1843363 (+) 867 WP_003732271.1 phosphate acyltransferase -
  G8O81_RS09530 buk 1843500..1844567 (+) 1068 WP_003722496.1 butyrate kinase -
  G8O81_RS09535 lpdA 1844582..1846009 (+) 1428 WP_014600811.1 dihydrolipoyl dehydrogenase -
  G8O81_RS09540 - 1846034..1847029 (+) 996 WP_003722498.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63522.38 Da        Isoelectric Point: 5.1267

>NTDB_id=430137 G8O81_RS09520 WP_014600810.1 1840678..1842369(+) (recN) [Listeria monocytogenes strain MB2]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=430137 G8O81_RS09520 WP_014600810.1 1840678..1842369(+) (recN) [Listeria monocytogenes strain MB2]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGTATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGTCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCGGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0NEF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538