Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HAV35_RS12950 Genome accession   NZ_CP050120
Coordinates   2569188..2569850 (+) Length   220 a.a.
NCBI ID   WP_010886844.1    Uniprot ID   Q9ZNA2
Organism   Deinococcus radiodurans strain BND-54     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2564188..2574850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS12920 (HAV35_12925) - 2564815..2565648 (-) 834 WP_010886850.1 ABC transporter permease -
  HAV35_RS12925 (HAV35_12930) - 2565699..2566514 (-) 816 WP_227085977.1 ABC-2 family transporter protein -
  HAV35_RS12930 (HAV35_12935) - 2566634..2567170 (+) 537 WP_010886848.1 hypothetical protein -
  HAV35_RS12935 (HAV35_12940) - 2567258..2568076 (+) 819 WP_010886847.1 DUF937 domain-containing protein -
  HAV35_RS12940 (HAV35_12945) - 2568138..2568605 (-) 468 WP_027480176.1 Lrp/AsnC family transcriptional regulator -
  HAV35_RS12945 (HAV35_12950) - 2568785..2569075 (+) 291 WP_010886845.1 YbaB/EbfC family nucleoid-associated protein -
  HAV35_RS12950 (HAV35_12955) recR 2569188..2569850 (+) 663 WP_010886844.1 recombination mediator RecR Machinery gene
  HAV35_RS12955 (HAV35_12960) - 2569868..2570479 (+) 612 WP_010886843.1 GNAT family protein -
  HAV35_RS12960 (HAV35_12965) - 2570859..2572775 (+) 1917 WP_010886842.1 aminodeoxychorismate components I/II -
  HAV35_RS12965 (HAV35_12970) - 2572775..2573470 (+) 696 WP_034350707.1 aminotransferase class IV -
  HAV35_RS12970 (HAV35_12975) - 2573549..2574232 (+) 684 WP_010886840.1 zinc metallopeptidase -
  HAV35_RS12975 (HAV35_12980) - 2574293..2574643 (-) 351 WP_010886839.1 FUN14 domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23723.18 Da        Isoelectric Point: 5.6623

>NTDB_id=430091 HAV35_RS12950 WP_010886844.1 2569188..2569850(+) (recR) [Deinococcus radiodurans strain BND-54]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQR
TICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEP
LGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKPQPPQRPGDEDGADGAAVPASR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=430091 HAV35_RS12950 WP_010886844.1 2569188..2569850(+) (recR) [Deinococcus radiodurans strain BND-54]
ATGAAATATCCGCCTTCCCTCGTGTCCCTCATCCGCGAGCTGTCACGCTTGCCGGGCATCGGCCCCAAGAGCGCGCAGCG
ACTCGCCTTTCACCTGTTCGAGCAGCCGCGTGAGGACATCGAGCGCCTCGCCTCCGCCCTGCTCGAAGCCAAGCGCGACC
TGCACGTCTGCCCGATTTGTTTCAACATCACCGACGCCGAGAAGTGCGACGTGTGCGCCGACCCCAGCCGCGACCAGCGC
ACCATCTGCGTGGTGGAAGAACCCGGCGACGTGATTGCGCTGGAGCGCAGCGGCGAGTACCGGGGGCTCTACCACGTCCT
GCACGGCGTTCTGAGCCCGATGAACGGCGTCGGCCCCGACAAGCTGCACATCAAGCCGCTGCTGCCCCGCGTGGGGCAAG
GCATGGAAGTGATTCTGGCGACTGGCACAACGGTGGAGGGCGACGCCACCGCGCTCTACCTTCAGCGGCTGCTCGAACCG
CTCGGCGCCGCCATCAGCCGCATCGCCTACGGGGTGCCGGTGGGCGGCTCGCTGGAATACACCGACGAGGTGACGCTGGG
CCGTGCGCTCACAGGCCGCCAGACCGTGAGCAAGCCCCAGCCGCCGCAACGTCCCGGTGACGAAGACGGCGCCGACGGAG
CAGCGGTGCCCGCATCCCGCTAA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1VDD
  PDB 2V1C
  PDB 4JCV

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1