Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HAV35_RS06940 Genome accession   NZ_CP050120
Coordinates   1374534..1375154 (-) Length   206 a.a.
NCBI ID   WP_027480036.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BND-54     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1369534..1380154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS06910 (HAV35_06915) crtE 1369725..1370714 (-) 990 WP_010888034.1 geranylgeranyl diphosphate synthase CrtE -
  HAV35_RS06915 (HAV35_06920) purM 1370782..1371843 (+) 1062 WP_162177712.1 phosphoribosylformylglycinamidine cyclo-ligase -
  HAV35_RS06920 (HAV35_06925) - 1371840..1372552 (+) 713 Protein_1374 histidine phosphatase family protein -
  HAV35_RS06925 (HAV35_06930) - 1372609..1373544 (-) 936 WP_027480038.1 hypothetical protein -
  HAV35_RS06930 (HAV35_06935) - 1373757..1373978 (+) 222 WP_027480037.1 RNA-binding S4 domain-containing protein -
  HAV35_RS06935 (HAV35_06940) - 1373975..1374523 (+) 549 WP_010888029.1 DUF1684 domain-containing protein -
  HAV35_RS06940 (HAV35_06945) comF 1374534..1375154 (-) 621 WP_027480036.1 ComF family protein Machinery gene
  HAV35_RS06945 (HAV35_06950) - 1375336..1375989 (-) 654 WP_010888027.1 hypothetical protein -
  HAV35_RS06950 (HAV35_06955) - 1376164..1377279 (+) 1116 WP_010888026.1 N-acetylmuramoyl-L-alanine amidase -
  HAV35_RS06955 (HAV35_06960) ychF 1377343..1378440 (-) 1098 WP_010888025.1 redox-regulated ATPase YchF -
  HAV35_RS06960 (HAV35_06965) - 1378799..1379290 (-) 492 WP_010888024.1 DUF4142 domain-containing protein -
  HAV35_RS06965 (HAV35_06970) - 1379470..1380021 (+) 552 WP_027480035.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21651.22 Da        Isoelectric Point: 10.9813

>NTDB_id=430082 HAV35_RS06940 WP_027480036.1 1374534..1375154(-) (comF) [Deinococcus radiodurans strain BND-54]
MIDLLRVLLPRACPGCGAQLGRAAGLCDRCRAELRPRVERHSPLSAQATPHLVTLGRYQGVPRRAVRALKYGGARDVAGP
LGRALAAGVPASWQIAAVVPVPLHPSRQRERGYNQAELLAQAMAAELGVPCLPLLTRTRATAQQAKLHASERSSNLAGAF
AVRGAVPPGTLLILDDVLTTGSTLLACRDALHAAGVTDLKYAAVAR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=430082 HAV35_RS06940 WP_027480036.1 1374534..1375154(-) (comF) [Deinococcus radiodurans strain BND-54]
ATGATCGACCTGCTGCGAGTGCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCCCAGCTGGGCCGCGCCGCCGGGCTGTG
TGACCGCTGCCGCGCGGAGCTTCGACCCCGGGTGGAGCGGCACTCGCCCCTCTCGGCGCAGGCCACGCCGCATCTGGTCA
CGCTGGGGCGGTACCAGGGCGTCCCCCGCCGGGCGGTACGGGCGCTGAAATACGGCGGGGCGCGGGACGTGGCCGGGCCG
CTGGGGCGGGCGCTCGCAGCGGGGGTTCCGGCGAGCTGGCAAATAGCCGCTGTGGTGCCGGTGCCGCTGCATCCTTCGCG
CCAGCGTGAGCGCGGGTACAACCAGGCCGAGTTGCTGGCGCAGGCGATGGCCGCTGAGCTGGGGGTGCCTTGCCTGCCGC
TCCTCACCCGCACCCGCGCCACCGCTCAGCAGGCCAAGTTGCACGCCAGCGAGCGCAGCAGCAATCTGGCGGGGGCTTTC
GCGGTGCGCGGCGCCGTGCCGCCAGGCACCCTCCTCATTCTGGACGATGTGCTGACGACCGGCAGCACGCTCCTGGCCTG
CCGGGACGCCCTGCACGCGGCGGGCGTGACCGACCTGAAATACGCGGCGGTAGCGCGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(4-38)

Phosphoribosyl transferase domain (Pribosyltran)

(116-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1