Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HAV35_RS04625 Genome accession   NZ_CP050120
Coordinates   890191..892458 (+) Length   755 a.a.
NCBI ID   WP_010888489.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BND-54     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885191..897458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS04595 (HAV35_04595) scpB 885332..885880 (+) 549 WP_010888496.1 SMC-Scp complex subunit ScpB -
  HAV35_RS04600 (HAV35_04600) - 885984..886766 (+) 783 WP_027479797.1 DUF4388 domain-containing protein -
  HAV35_RS04605 (HAV35_04605) - 886804..887556 (-) 753 WP_010888493.1 TSUP family transporter -
  HAV35_RS04610 (HAV35_04610) - 887662..888081 (+) 420 WP_010888492.1 organic hydroperoxide resistance protein -
  HAV35_RS04615 (HAV35_04615) gatA 888139..889587 (-) 1449 WP_010888491.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  HAV35_RS04620 (HAV35_04620) comEA 889817..890197 (+) 381 WP_010888490.1 ComEA family DNA-binding protein Machinery gene
  HAV35_RS04625 (HAV35_04625) comEC 890191..892458 (+) 2268 WP_010888489.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HAV35_RS04630 (HAV35_04630) - 893165..894178 (+) 1014 WP_034350037.1 SIS domain-containing protein -
  HAV35_RS04635 (HAV35_04635) - 894253..895008 (+) 756 WP_010888486.1 serine/threonine-protein kinase -
  HAV35_RS04640 (HAV35_04640) - 895087..895314 (-) 228 WP_010888485.1 hypothetical protein -
  HAV35_RS04645 (HAV35_04645) msrA 895314..895886 (-) 573 WP_051618834.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 79381.05 Da        Isoelectric Point: 10.8771

>NTDB_id=430081 HAV35_RS04625 WP_010888489.1 890191..892458(+) (comEC) [Deinococcus radiodurans strain BND-54]
MVTREGATRFDPQTGEVLTAPARRRGHRAEAGRLAWPLPLALGIIGGIGWQLGLGWAAVPLLLGAALALLDARPLLAVLA
LLGGGLGYGSAHLQAREPDRIAPWIGALVTLRGHWDGQFLTLDEPKARVALAPKPRQGPGEVVVAGRLIRPDGRRIPGGF
DQAAWLRSQGGLLVPTPKAVLVRAEVKKHVPERGLRGWFRRGLSAHLSPRNAALMTAVELGERGDIGRETFDEGFSVRDA
FARAGLAHLMALSGQNVALLTGTLIWLLGWLGARPSWRYGLPAALLPFYLLLLVGATPSITRAVLMGGVALLALMVGRGR
PDPLGIVALTASACLLLFPLWLLDVGFQLSFLAVLGLLLSGKLADRLPQRWPQWLKLALAATVLAELATLPVIAHNFGQL
PLVGLPANLLAAPIMAVLVPLGFLAGLLGPAGGLVNWAVAPLASALLWVAQTFGSAPVLGWGTLGAGGFLAYALAAVAGM
GWLLGRVRGQAALTIALACAALSWLPAQLRPARELVFLDVGQGDATLLRVPGLTMLVDGGGSVGSDYDVGRGTVLPALRA
LGVRKLDVVVATHADTDHIEGLSSVLRGLPVGELWVGQLKKAGDDPVLDAVLTAARERNVPVRQIRRGDQVTAGPVKVTA
LWPVGNVWSTADNDNSVALRVEDGPFRAALLGDLPDPAEALIGPGHLTLLKAAHHGSRYSTGEVLLKQTKPKDVLISVGR
NTYGHPTQAVLDRIAAAGAKVWRTDQVGTVRWPLP

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=430081 HAV35_RS04625 WP_010888489.1 890191..892458(+) (comEC) [Deinococcus radiodurans strain BND-54]
ATGGTGACTCGTGAAGGGGCGACCCGCTTCGACCCGCAAACGGGTGAGGTGCTGACTGCCCCTGCCCGCCGTCGGGGTCA
CCGCGCCGAGGCCGGGCGGCTGGCGTGGCCGCTCCCCCTCGCGCTCGGCATCATCGGCGGCATCGGGTGGCAGCTCGGGC
TGGGGTGGGCCGCCGTGCCGCTGCTGCTCGGTGCAGCGTTGGCCCTGCTGGACGCCCGCCCGCTGCTGGCGGTGCTCGCG
CTGCTCGGTGGAGGACTGGGGTACGGCTCGGCGCACTTGCAGGCCCGCGAGCCGGACCGCATCGCCCCCTGGATAGGTGC
CCTCGTGACCCTGCGCGGCCACTGGGACGGGCAATTTCTGACGCTGGACGAGCCGAAAGCGCGGGTGGCCCTCGCTCCCA
AACCGAGGCAAGGGCCGGGCGAAGTGGTGGTGGCCGGGCGGCTGATTCGCCCCGATGGCCGGCGTATTCCCGGCGGCTTT
GACCAGGCGGCGTGGCTGCGCTCGCAAGGCGGGCTTCTGGTGCCCACGCCGAAAGCCGTGCTGGTGCGTGCCGAGGTCAA
AAAGCATGTCCCGGAACGTGGCCTGCGCGGCTGGTTTCGTCGGGGCCTGAGTGCCCATCTCTCGCCCCGCAACGCTGCCC
TGATGACGGCGGTGGAACTCGGCGAGCGCGGTGACATCGGACGCGAAACGTTTGATGAGGGCTTCTCGGTGCGCGACGCC
TTTGCCCGCGCTGGGCTCGCGCACCTGATGGCGTTGAGCGGGCAGAACGTGGCGCTGCTGACTGGCACATTGATCTGGCT
GCTCGGGTGGCTGGGGGCGCGGCCCAGCTGGCGCTATGGCCTGCCCGCCGCGCTGCTGCCCTTTTACCTGCTGCTCCTCG
TCGGCGCCACACCGAGCATCACCCGCGCCGTGCTGATGGGCGGTGTGGCCCTGCTCGCGCTGATGGTGGGCCGGGGGCGG
CCCGACCCGTTGGGCATCGTGGCGCTGACAGCGAGTGCCTGCCTGCTGTTGTTTCCGCTGTGGCTGCTGGACGTGGGGTT
TCAGCTTTCCTTTCTGGCGGTCCTCGGCCTGCTGCTCTCGGGCAAACTGGCCGACCGGCTGCCGCAGCGCTGGCCGCAGT
GGCTCAAGCTCGCGCTCGCGGCCACCGTGCTCGCCGAACTCGCCACCCTGCCAGTCATCGCGCACAATTTCGGGCAACTG
CCGCTGGTGGGCTTGCCCGCCAACCTGCTCGCCGCGCCCATCATGGCGGTGCTGGTGCCGCTCGGCTTCCTCGCGGGGCT
GCTCGGCCCGGCAGGCGGGCTGGTGAACTGGGCCGTGGCGCCGCTCGCTTCTGCTCTGCTGTGGGTCGCGCAGACTTTCG
GCAGTGCCCCGGTGCTGGGCTGGGGCACGCTCGGCGCGGGCGGCTTTCTTGCCTACGCGCTCGCCGCTGTTGCGGGGATG
GGTTGGCTGCTCGGGCGGGTGCGGGGGCAAGCCGCGTTGACCATTGCCCTCGCCTGCGCCGCGCTGTCCTGGCTGCCGGC
CCAGTTGCGCCCCGCCCGCGAACTGGTCTTTCTGGACGTGGGCCAGGGCGACGCCACCCTGCTGCGGGTGCCGGGCCTGA
CGATGCTCGTGGACGGCGGCGGCTCGGTCGGCAGCGACTACGACGTGGGCCGGGGCACCGTGTTGCCGGCTTTGCGGGCT
CTCGGGGTGCGGAAGCTGGACGTGGTGGTGGCGACGCACGCCGACACCGACCACATCGAGGGCCTTTCCAGCGTCCTGCG
CGGTCTTCCGGTGGGCGAGTTGTGGGTGGGCCAGCTCAAAAAGGCGGGCGACGACCCGGTGCTCGACGCCGTGCTGACCG
CTGCCCGTGAAAGAAATGTCCCGGTGCGCCAGATTCGGCGGGGCGACCAGGTGACGGCGGGACCGGTCAAAGTGACGGCT
CTGTGGCCTGTCGGCAACGTCTGGTCCACTGCTGACAACGACAACTCGGTGGCGCTGCGGGTCGAGGACGGACCATTCCG
TGCCGCCTTGCTCGGTGACTTGCCCGACCCCGCCGAGGCCCTGATTGGCCCCGGTCACCTCACGCTGCTCAAGGCCGCGC
ACCACGGCAGCCGCTACAGCACCGGCGAAGTCCTCCTCAAGCAGACGAAGCCGAAAGACGTGCTTATCAGCGTGGGACGC
AACACTTACGGACACCCGACACAGGCGGTGCTCGACCGAATAGCCGCTGCCGGGGCGAAGGTATGGCGGACCGATCAGGT
GGGAACGGTGCGGTGGCCTTTGCCTTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-482)

Metallo-beta-lactamase superfamily (Lactamase_B)

(519-708)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1