Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HAV35_RS00030 Genome accession   NZ_CP050120
Coordinates   3997..5109 (+) Length   370 a.a.
NCBI ID   WP_010886768.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BND-54     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1..10109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV35_RS00010 (HAV35_00010) - 494..778 (+) 285 WP_010886772.1 hypothetical protein -
  HAV35_RS00015 (HAV35_00015) - 771..1397 (+) 627 WP_010886771.1 N-(5'-phosphoribosyl)anthranilate isomerase -
  HAV35_RS00020 (HAV35_00020) - 1611..2453 (-) 843 WP_027480300.1 metalloenzyme domain protein -
  HAV35_RS00025 (HAV35_00025) - 2598..3761 (+) 1164 WP_027480301.1 tetratricopeptide repeat protein -
  HAV35_RS00030 (HAV35_00030) dprA 3997..5109 (+) 1113 WP_010886768.1 DNA-processing protein DprA Machinery gene
  HAV35_RS00035 (HAV35_00035) efp 5200..5757 (+) 558 WP_010886767.1 elongation factor P -
  HAV35_RS00040 (HAV35_00040) accB 5956..6519 (+) 564 WP_027480302.1 acetyl-CoA carboxylase biotin carboxyl carrier protein -
  HAV35_RS00045 (HAV35_00045) accC 6608..7945 (+) 1338 WP_010886765.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HAV35_RS00050 (HAV35_00050) - 8057..9130 (-) 1074 WP_027480303.1 S-layer homology domain-containing protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 37775.19 Da        Isoelectric Point: 6.6652

>NTDB_id=430074 HAV35_RS00030 WP_010886768.1 3997..5109(+) (dprA) [Deinococcus radiodurans strain BND-54]
MTLPSPAAAHAELLALLTLRFTPGLGPRRIENLRRHFGSAEAALAAPLTELRRVEGLDSRSVAAIGGAKAAEEARAELNK
AAERGVTLLGRGLPGYPAALEALGDPPAVLWVRGAGGAELLAGLGTVPHSVGIVGTRAASPHALALTRTIAGELAAAGVL
IVSGLARGVDTAAHTAALEAASGEASSPTIGVLGSAVDVIYPRENHDLAGRMVVVSEYPLGTGPAQHHFPSRNRVIAALS
AGVLVVEGERKSGSLITATHALDCGRTVFAVPGRAGDPRASGPHALIRDGAVLTESAQDVLTELNWGLAPAPAVPDLPPE
QARVLRALQTPATLDDLAATTGLSIPELQTALVMLQLQGLAYEVGGRWSR

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=430074 HAV35_RS00030 WP_010886768.1 3997..5109(+) (dprA) [Deinococcus radiodurans strain BND-54]
GTGACCCTTCCCTCCCCTGCTGCCGCCCACGCCGAACTGCTGGCCCTGCTCACCCTGCGGTTTACGCCCGGACTGGGGCC
ACGGCGCATCGAAAACCTGCGGCGGCATTTCGGCAGCGCGGAGGCGGCACTGGCGGCGCCTCTGACCGAGCTGCGGCGGG
TGGAGGGGCTGGACTCGCGTTCGGTGGCGGCGATTGGCGGGGCAAAAGCGGCAGAGGAGGCGCGGGCCGAACTGAACAAG
GCGGCAGAGCGCGGCGTCACCCTGCTCGGACGCGGTTTGCCCGGCTATCCGGCGGCGCTGGAAGCCCTGGGTGATCCGCC
CGCCGTGCTGTGGGTGCGGGGCGCGGGCGGCGCCGAGCTGCTCGCCGGGCTCGGCACCGTGCCGCACTCGGTGGGCATCG
TGGGCACGCGGGCAGCGAGTCCCCACGCGCTGGCGCTGACCCGGACCATCGCAGGCGAGCTGGCAGCAGCAGGCGTCCTC
ATCGTCAGCGGGCTGGCGCGGGGGGTGGACACGGCGGCGCACACGGCAGCCCTGGAAGCTGCAAGCGGGGAGGCGAGCAG
CCCCACCATCGGGGTGCTCGGCAGCGCGGTGGACGTGATTTATCCGCGTGAAAACCATGACCTCGCCGGGCGAATGGTGG
TCGTCAGCGAGTATCCGCTCGGCACCGGCCCGGCGCAGCACCACTTCCCGAGCCGCAACCGCGTCATCGCCGCGCTCTCG
GCGGGCGTGCTGGTGGTGGAAGGCGAGCGCAAGTCCGGTTCGCTCATCACCGCTACTCACGCGCTGGACTGCGGGCGCAC
CGTGTTCGCCGTGCCGGGGCGGGCCGGCGACCCCCGCGCGAGTGGCCCCCACGCCCTGATTCGTGACGGGGCTGTCCTCA
CCGAGTCGGCGCAGGACGTGCTGACCGAGCTGAACTGGGGCCTGGCCCCTGCCCCAGCGGTGCCCGACCTGCCGCCCGAG
CAAGCGCGGGTGCTGCGGGCGCTGCAAACCCCGGCCACATTGGACGACCTTGCCGCCACAACTGGCCTGAGCATTCCCGA
GTTGCAGACCGCGCTCGTCATGTTGCAGCTTCAGGGGCTGGCCTACGAAGTGGGCGGGCGTTGGAGTCGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-362)

DNA recombination-mediator protein A (DNA_processg_A)

(83-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1