Detailed information NTG0430072

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HAV23_RS13235
• Genome accession: NZ_CP050116
• Coordinates: 2640061..2641227 (+)
• Length: 388 a.a.
• NCBI ID: WP_010888696.1
• Uniprot ID: Q9RSQ9
• Organism: Deinococcus radiodurans strain BNK-50
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2635061..2646227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAV23_RS13215 (HAV23_13220)	-	2635274..2635564 (+)	291	WP_027479958.1	hypothetical protein	-
HAV23_RS13220 (HAV23_13225)	-	2635640..2636077 (+)	438	WP_034350316.1	hypothetical protein	-
HAV23_RS13225 (HAV23_13230)	-	2636083..2637093 (-)	1011	WP_010888693.1	WD repeat-containing protein	-
HAV23_RS13230 (HAV23_13235)	pnp	2637185..2639524 (+)	2340	WP_027479957.1	polyribonucleotide nucleotidyltransferase	-
HAV23_RS13235 (HAV23_13240)	pilD	2640061..2641227 (+)	1167	WP_010888696.1	A24 family peptidase	Machinery gene
HAV23_RS13240 (HAV23_13245)	-	2641429..2641887 (-)	459	WP_010888697.1	divergent PAP2 family protein	-
HAV23_RS13245 (HAV23_13250)	nusB	2641911..2642489 (-)	579	WP_010888698.1	transcription antitermination factor NusB	-
HAV23_RS13250 (HAV23_13255)	-	2642486..2642893 (-)	408	WP_010888699.1	Asp23/Gls24 family envelope stress response protein	-
HAV23_RS13255 (HAV23_13260)	ligA	2642945..2645047 (-)	2103	WP_243760110.1	NAD-dependent DNA ligase LigA	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 41204.65 Da
• Isoelectric Point: 5.8430

>NTDB_id=430072 HAV23_RS13235 WP_010888696.1 2640061..2641227(+) (pilD) [Deinococcus radiodurans strain BNK-50]
MNVDTLIVLFAGLLGLLVGSFSNVLIWRLPRGENIAFPPSHCPKCDHPLKPTDLVPVFSWLALGGRCRYCRAPINPRYPV
VELLTGVAYAVIAATFPLSTYEAGTLGLMVLFTILLVGSAIDLDTMTLPDELTLPGTLLGVLFGLAGAGLYAQEGQLGLP
NVAQAVEGALMGAGVIVLISVYGSWVLRRFRERQWPEAPIGYQQISLGLLAGAWLGPWWGLGVALLSAAVNVAAKKAVRI
PELLTLGGFLVSLALSSAGTGPGLLDMLRGGLMAAGAVSLVCGVYWWIYWRRNKQAEDDGTDDEQSDPVAMGFGDVKLAA
VIGAFLGWERLLLAVVVAIFAGAVLGLVQLALKQENRVKFGPYLALGAVVALLWGGPLLDWYRGLLGM

Nucleotide

• Length: 1167 bp

>NTDB_id=430072 HAV23_RS13235 WP_010888696.1 2640061..2641227(+) (pilD) [Deinococcus radiodurans strain BNK-50]
GTGAACGTCGACACCCTCATCGTCCTCTTCGCCGGGCTGCTGGGCCTGCTGGTGGGGTCTTTTTCCAATGTGCTGATCTG
GCGCCTGCCGAGAGGCGAAAACATCGCTTTTCCGCCGAGCCACTGCCCCAAGTGCGACCATCCGCTCAAGCCCACCGACC
TCGTGCCGGTCTTTTCCTGGCTGGCGCTGGGAGGCCGCTGCCGCTACTGCCGCGCACCCATTAACCCGCGCTATCCGGTG
GTGGAACTGCTCACGGGCGTCGCCTACGCCGTCATTGCCGCGACGTTTCCGCTGAGCACCTACGAGGCGGGCACGCTGGG
ACTGATGGTGCTGTTCACGATTTTGCTCGTCGGCAGCGCGATTGACCTCGACACCATGACTCTCCCTGACGAGCTGACGC
TGCCCGGCACCCTGCTCGGCGTGCTGTTCGGGCTCGCGGGCGCGGGGCTCTACGCGCAGGAGGGTCAGTTGGGCCTGCCC
AACGTCGCGCAGGCGGTGGAAGGCGCGCTGATGGGCGCGGGCGTCATCGTCTTGATCAGCGTGTACGGCTCGTGGGTGCT
GCGGCGCTTCCGCGAACGGCAGTGGCCTGAAGCGCCCATCGGTTACCAGCAAATCAGCCTGGGGCTGCTGGCAGGCGCGT
GGCTGGGGCCGTGGTGGGGCCTGGGCGTCGCGCTGCTCTCGGCGGCGGTCAACGTGGCGGCGAAAAAGGCCGTGCGGATT
CCTGAACTGCTCACGCTGGGCGGCTTTCTGGTCAGCCTCGCCCTGAGCAGCGCGGGCACAGGGCCGGGCCTGCTCGACAT
GCTGCGCGGCGGCCTGATGGCGGCGGGCGCCGTCTCGCTCGTCTGCGGCGTGTACTGGTGGATCTACTGGCGGCGCAACA
AGCAGGCTGAAGACGACGGCACCGACGACGAGCAGAGTGACCCGGTGGCGATGGGCTTCGGGGACGTGAAGCTCGCCGCT
GTGATTGGCGCCTTTCTGGGCTGGGAGCGGCTGCTGCTTGCCGTGGTGGTGGCAATTTTTGCGGGCGCCGTGCTGGGGCT
GGTGCAACTCGCGCTCAAGCAGGAAAACCGGGTCAAGTTCGGCCCTTACCTCGCCCTGGGGGCCGTCGTCGCGCTGCTGT
GGGGCGGGCCGCTGCTGGACTGGTACCGGGGGCTGCTAGGGATGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (109-229)

• Type IV leader peptidase family (Peptidase_A24) (238-347)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-96)

3D structure

• AlphaFold DB: Q9RSQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1