Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HAV23_RS09855 Genome accession   NZ_CP050116
Coordinates   1955294..1955914 (+) Length   206 a.a.
NCBI ID   WP_027480036.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain BNK-50     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1950294..1960914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS09830 (HAV23_09830) - 1950426..1950977 (-) 552 WP_027480035.1 TetR/AcrR family transcriptional regulator -
  HAV23_RS09835 (HAV23_09835) - 1951157..1951648 (+) 492 WP_010888024.1 DUF4142 domain-containing protein -
  HAV23_RS09840 (HAV23_09840) ychF 1952007..1953104 (+) 1098 WP_010888025.1 redox-regulated ATPase YchF -
  HAV23_RS09845 (HAV23_09845) - 1953168..1954283 (-) 1116 WP_010888026.1 N-acetylmuramoyl-L-alanine amidase -
  HAV23_RS09850 (HAV23_09850) - 1954458..1955111 (+) 654 WP_010888027.1 hypothetical protein -
  HAV23_RS09855 (HAV23_09855) comF 1955294..1955914 (+) 621 WP_027480036.1 ComF family protein Machinery gene
  HAV23_RS09860 (HAV23_09860) - 1955925..1956473 (-) 549 WP_010888029.1 DUF1684 domain-containing protein -
  HAV23_RS09865 (HAV23_09865) - 1956470..1956691 (-) 222 WP_027480037.1 RNA-binding S4 domain-containing protein -
  HAV23_RS09870 (HAV23_09870) - 1956904..1957839 (+) 936 WP_027480038.1 hypothetical protein -
  HAV23_RS09875 (HAV23_09875) - 1957896..1958609 (-) 714 WP_010888032.1 histidine phosphatase family protein -
  HAV23_RS09880 (HAV23_09880) purM 1958606..1959669 (-) 1064 Protein_1955 phosphoribosylformylglycinamidine cyclo-ligase -
  HAV23_RS09885 (HAV23_09885) crtE 1959734..1960723 (+) 990 WP_010888034.1 geranylgeranyl diphosphate synthase CrtE -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21651.22 Da        Isoelectric Point: 10.9813

>NTDB_id=430066 HAV23_RS09855 WP_027480036.1 1955294..1955914(+) (comF) [Deinococcus radiodurans strain BNK-50]
MIDLLRVLLPRACPGCGAQLGRAAGLCDRCRAELRPRVERHSPLSAQATPHLVTLGRYQGVPRRAVRALKYGGARDVAGP
LGRALAAGVPASWQIAAVVPVPLHPSRQRERGYNQAELLAQAMAAELGVPCLPLLTRTRATAQQAKLHASERSSNLAGAF
AVRGAVPPGTLLILDDVLTTGSTLLACRDALHAAGVTDLKYAAVAR

Nucleotide


Download         Length: 621 bp        

>NTDB_id=430066 HAV23_RS09855 WP_027480036.1 1955294..1955914(+) (comF) [Deinococcus radiodurans strain BNK-50]
ATGATCGACCTGCTGCGAGTGCTGCTGCCCCGCGCCTGCCCCGGCTGCGGCGCCCAGCTGGGCCGCGCCGCCGGGCTGTG
TGACCGCTGCCGCGCGGAGCTTCGACCCCGGGTGGAGCGGCACTCGCCCCTCTCGGCGCAGGCCACGCCGCATCTGGTCA
CGCTGGGGCGGTACCAGGGCGTCCCCCGCCGGGCGGTACGGGCGCTGAAATACGGCGGGGCGCGGGACGTGGCCGGGCCG
CTGGGGCGGGCGCTCGCAGCGGGGGTTCCGGCGAGCTGGCAAATAGCCGCTGTGGTGCCGGTGCCGCTGCATCCTTCGCG
CCAGCGTGAGCGCGGGTACAACCAGGCCGAGTTGCTGGCGCAGGCGATGGCCGCTGAGCTGGGGGTGCCTTGCCTGCCGC
TCCTCACCCGCACCCGCGCCACCGCTCAGCAGGCCAAGTTGCACGCCAGCGAGCGCAGCAGCAATCTGGCGGGGGCTTTC
GCGGTGCGCGGCGCCGTGCCGCCAGGCACCCTCCTCATTCTGGACGATGTGCTGACGACCGGCAGCACGCTCCTGGCCTG
CCGGGACGCCCTGCACGCGGCGGGCGTGACCGACCTGAAATACGCGGCGGTAGCGCGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(4-38)

Phosphoribosyl transferase domain (Pribosyltran)

(116-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1