Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HAV23_RS03870 Genome accession   NZ_CP050116
Coordinates   760537..761199 (-) Length   220 a.a.
NCBI ID   WP_010886844.1    Uniprot ID   Q9ZNA2
Organism   Deinococcus radiodurans strain BNK-50     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 755537..766199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV23_RS03845 (HAV23_03845) - 755745..756095 (+) 351 WP_010886839.1 FUN14 domain-containing protein -
  HAV23_RS03850 (HAV23_03850) - 756156..756839 (-) 684 WP_010886840.1 zinc metallopeptidase -
  HAV23_RS03855 (HAV23_03855) - 756918..757613 (-) 696 WP_034350707.1 aminotransferase class IV -
  HAV23_RS03860 (HAV23_03860) - 757613..759529 (-) 1917 WP_010886842.1 aminodeoxychorismate components I/II -
  HAV23_RS03865 (HAV23_03865) - 759908..760519 (-) 612 WP_010886843.1 GNAT family protein -
  HAV23_RS03870 (HAV23_03870) recR 760537..761199 (-) 663 WP_010886844.1 recombination mediator RecR Machinery gene
  HAV23_RS03875 (HAV23_03875) - 761312..761602 (-) 291 WP_010886845.1 YbaB/EbfC family nucleoid-associated protein -
  HAV23_RS03880 (HAV23_03880) - 761782..762249 (+) 468 WP_027480176.1 Lrp/AsnC family transcriptional regulator -
  HAV23_RS03885 (HAV23_03885) - 762311..763129 (-) 819 WP_010886847.1 DUF937 domain-containing protein -
  HAV23_RS03890 (HAV23_03890) - 763217..763753 (-) 537 WP_010886848.1 hypothetical protein -
  HAV23_RS03895 (HAV23_03895) - 763873..764688 (+) 816 WP_227085977.1 ABC-2 family transporter protein -
  HAV23_RS03900 (HAV23_03900) - 764739..765572 (+) 834 WP_010886850.1 ABC transporter permease -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23723.18 Da        Isoelectric Point: 5.6623

>NTDB_id=430057 HAV23_RS03870 WP_010886844.1 760537..761199(-) (recR) [Deinococcus radiodurans strain BNK-50]
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQR
TICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEP
LGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKPQPPQRPGDEDGADGAAVPASR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=430057 HAV23_RS03870 WP_010886844.1 760537..761199(-) (recR) [Deinococcus radiodurans strain BNK-50]
ATGAAATATCCGCCTTCCCTCGTGTCCCTCATCCGCGAGCTGTCACGCTTGCCGGGCATCGGCCCCAAGAGCGCGCAGCG
ACTCGCCTTTCACCTGTTCGAGCAGCCGCGTGAGGACATCGAGCGCCTCGCCTCCGCCCTGCTCGAAGCCAAGCGCGACC
TGCACGTCTGCCCGATTTGTTTCAACATCACCGACGCCGAGAAGTGCGACGTGTGCGCCGACCCCAGCCGCGACCAGCGC
ACCATCTGCGTGGTGGAAGAACCCGGCGACGTGATTGCGCTGGAGCGCAGCGGCGAGTACCGGGGGCTCTACCACGTCCT
GCACGGCGTTCTGAGCCCGATGAACGGCGTCGGCCCCGACAAGCTGCACATCAAGCCGCTGCTGCCCCGCGTGGGGCAAG
GCATGGAAGTGATTCTGGCGACTGGCACAACGGTGGAGGGCGACGCCACCGCGCTCTACCTTCAGCGGCTGCTCGAACCG
CTCGGCGCCGCCATCAGCCGCATCGCCTACGGGGTGCCGGTGGGCGGCTCGCTGGAATACACCGACGAGGTGACGCTGGG
CCGTGCGCTCACAGGCCGCCAGACCGTGAGCAAGCCCCAGCCGCCGCAACGTCCCGGTGACGAAGACGGCGCCGACGGAG
CAGCGGTGCCCGCATCCCGCTAA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1VDD
  PDB 2V1C
  PDB 4JCV

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1