Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IF751_RS12975 Genome accession   NZ_CP062407
Coordinates   2660187..2661461 (-) Length   424 a.a.
NCBI ID   WP_240053016.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2655187..2666461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF751_RS12950 (IF751_12860) hisS 2655748..2657010 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  IF751_RS12955 (IF751_12865) aspS 2657026..2658792 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  IF751_RS12965 (IF751_12875) - 2659125..2659253 (+) 129 WP_014937034.1 hypothetical protein -
  IF751_RS12970 (IF751_12880) - 2659253..2660026 (+) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  IF751_RS12975 (IF751_12885) rarA 2660187..2661461 (-) 1275 WP_240053016.1 replication-associated recombination protein A Machinery gene
  IF751_RS12980 (IF751_12890) - 2661546..2661968 (+) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  IF751_RS12985 (IF751_12895) - 2662068..2662244 (+) 177 WP_240053017.1 CsbD family protein -
  IF751_RS12990 (IF751_12900) - 2662290..2662436 (+) 147 WP_000009238.1 SAS049 family protein -
  IF751_RS12995 (IF751_12905) - 2662673..2663686 (-) 1014 WP_000985896.1 LLM class flavin-dependent oxidoreductase -
  IF751_RS13000 (IF751_12910) - 2663998..2665140 (+) 1143 WP_000409169.1 cysteine desulfurase family protein -
  IF751_RS13005 (IF751_12915) mnmA 2665141..2666259 (+) 1119 WP_020977312.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=429647 IF751_RS12975 WP_240053016.1 2660187..2661461(-) (rarA) [Staphylococcus aureus strain NAS_NP_181]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDSYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=429647 IF751_RS12975 WP_240053016.1 2660187..2661461(-) (rarA) [Staphylococcus aureus strain NAS_NP_181]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACA
GTTATCGACATGTTACATTGCAAGATGCTAAAGATTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTACGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGGATACCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684