Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VFU_RS02645 Genome accession   NC_016602
Coordinates   546962..547663 (-) Length   233 a.a.
NCBI ID   WP_014204285.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541962..552663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS02615 (vfu_A00519) gspL 542183..543394 (+) 1212 WP_041942465.1 type II secretion system protein GspL -
  VFU_RS02620 (vfu_A00520) - 543404..543913 (+) 510 WP_004728457.1 type II secretion system protein M -
  VFU_RS02625 (vfu_A00521) - 543910..544668 (+) 759 WP_014204284.1 type II secretion system protein N -
  VFU_RS02630 (vfu_A00522) cysQ 544729..545556 (-) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VFU_RS02635 (vfu_A00523) nudE 545580..546128 (-) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  VFU_RS02640 (vfu_A00524) nfuA 546274..546861 (-) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  VFU_RS02645 (vfu_A00525) comF 546962..547663 (-) 702 WP_014204285.1 amidophosphoribosyltransferase Machinery gene
  VFU_RS02650 (vfu_A00526) bioH 547750..548520 (+) 771 WP_014204286.1 pimeloyl-ACP methyl ester esterase BioH -
  VFU_RS02655 (vfu_A00527) - 548649..549119 (+) 471 WP_004728470.1 hypothetical protein -
  VFU_RS02660 (vfu_A00528) - 549202..551510 (-) 2309 Protein_490 Tex family protein -
  VFU_RS02665 (vfu_A00530) - 551566..552228 (-) 663 WP_004728474.1 hypothetical protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26249.58 Da        Isoelectric Point: 9.0291

>NTDB_id=42926 VFU_RS02645 WP_014204285.1 546962..547663(-) (comF) [Vibrio furnissii NCTC 11218]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLITCVPLHWRRQLRRGFNQSDVLARQLTQHLGSEYDPQLFSRPH
ATVPQHGLDKAQRRRNLNRAFVLNHVPCLQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=42926 VFU_RS02645 WP_014204285.1 546962..547663(-) (comF) [Vibrio furnissii NCTC 11218]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTTTGTGTGGGCGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCACGGCCCCTGGCTGCATTACT
CGCGCCCAGAATCACCACGCCTGCGCCGCTGATCACGTGCGTACCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCACCCAGCATTTGGGCAGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGCGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGTGCC
GTGCCTGCAACACGTAGCGATTGTCGACGATGTCGTCACCACTGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(183-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.378

100

0.644
  comF Vibrio campbellii strain DS40M4

48.536

100

0.498

Multiple sequence alignment