Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IF765_RS01950 Genome accession   NZ_CP062403
Coordinates   362752..364026 (-) Length   424 a.a.
NCBI ID   WP_240052840.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 357752..369026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF765_RS01925 (IF765_01925) hisS 358313..359575 (+) 1263 WP_000590826.1 histidine--tRNA ligase -
  IF765_RS01930 (IF765_01930) aspS 359591..361357 (+) 1767 WP_000044799.1 aspartate--tRNA ligase -
  IF765_RS01940 (IF765_01940) - 361690..361818 (+) 129 WP_001790559.1 hypothetical protein -
  IF765_RS01945 (IF765_01945) - 361818..362591 (+) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  IF765_RS01950 (IF765_01950) rarA 362752..364026 (-) 1275 WP_240052840.1 replication-associated recombination protein A Machinery gene
  IF765_RS01955 (IF765_01955) - 364111..364533 (+) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  IF765_RS01960 (IF765_01960) - 364633..364815 (+) 183 WP_000752909.1 CsbD family protein -
  IF765_RS01965 (IF765_01965) - 364855..365001 (+) 147 WP_000009238.1 SAS049 family protein -
  IF765_RS01970 (IF765_01970) - 365238..366251 (-) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  IF765_RS01975 (IF765_01975) - 366563..367705 (+) 1143 WP_000409158.1 cysteine desulfurase family protein -
  IF765_RS01980 (IF765_01980) mnmA 367706..368824 (+) 1119 WP_000066092.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47292.89 Da        Isoelectric Point: 8.3539

>NTDB_id=429235 IF765_RS01950 WP_240052840.1 362752..364026(-) (rarA) [Staphylococcus aureus strain NAS_OP_052]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGVTTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=429235 IF765_RS01950 WP_240052840.1 362752..364026(-) (rarA) [Staphylococcus aureus strain NAS_OP_052]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGTTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684