Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VFU_RS01440 Genome accession   NC_016602
Coordinates   298466..299581 (-) Length   371 a.a.
NCBI ID   WP_014204150.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 293466..304581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS01410 (vfu_A00264) hemF 294037..294951 (-) 915 WP_014204146.1 oxygen-dependent coproporphyrinogen oxidase -
  VFU_RS01415 (vfu_A00265) - 294971..295528 (-) 558 WP_014204147.1 L-threonylcarbamoyladenylate synthase -
  VFU_RS01420 (vfu_A00266) purE 295727..296212 (+) 486 WP_004728789.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VFU_RS01425 (vfu_A00267) - 296216..297349 (+) 1134 WP_014204148.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VFU_RS01430 (vfu_A00268) - 297383..297961 (-) 579 WP_014204149.1 type I DNA topoisomerase -
  VFU_RS01435 (vfu_A00269) - 297987..298463 (-) 477 WP_004728783.1 DUF494 family protein -
  VFU_RS01440 (vfu_A00270) dprA 298466..299581 (-) 1116 WP_014204150.1 DNA-processing protein DprA Machinery gene
  VFU_RS01445 (vfu_A00271) - 299581..300699 (-) 1119 WP_014204151.1 LysM peptidoglycan-binding domain-containing protein -
  VFU_RS01450 (vfu_A00272) def 300839..301351 (+) 513 WP_004728778.1 peptide deformylase -
  VFU_RS01455 (vfu_A00273) fmt 301370..302317 (+) 948 WP_014204152.1 methionyl-tRNA formyltransferase -
  VFU_RS01460 (vfu_A00274) rsmB 302368..303648 (+) 1281 WP_014204153.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40653.41 Da        Isoelectric Point: 6.8088

>NTDB_id=42922 VFU_RS01440 WP_014204150.1 298466..299581(-) (dprA) [Vibrio furnissii NCTC 11218]
MLERDLAAWLAFSFAPQLGMHRLQRLASRHALHDLKQQLGREGEAAGLKAHQIHYLQQQADREVDACLLWCQQAEHRHIV
TPFHAHYPARLKEIAAAPPVLFVAGRLDTLCAPQIAIVGSRNASIDSQHIAHQFASQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLGCIYPARHRTLAERIMASGAVVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAVEQSREVFVVPGSIRHPNCHGSNQLIRQGACLVQHIDHILDEVGPMMDWSRNQSQPEQTELFSCSYHEEELPFPEL
LANVGEEATPVDILANRTHIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=42922 VFU_RS01440 WP_014204150.1 298466..299581(-) (dprA) [Vibrio furnissii NCTC 11218]
ATGCTAGAACGTGATCTGGCGGCGTGGCTGGCATTTAGCTTTGCCCCCCAATTGGGAATGCATCGATTACAGCGTTTGGC
CAGCCGCCATGCGTTACATGACCTCAAACAACAGCTGGGTCGAGAAGGCGAAGCGGCCGGGCTCAAAGCCCATCAGATCC
ACTACCTACAGCAGCAAGCGGATCGTGAAGTTGATGCTTGCCTGCTTTGGTGTCAGCAAGCGGAACATCGCCACATCGTG
ACCCCATTTCATGCCCATTATCCGGCGCGATTAAAAGAGATTGCCGCGGCGCCTCCGGTGCTGTTTGTGGCCGGTCGGCT
TGACACGCTGTGCGCGCCACAAATCGCGATTGTGGGCAGCCGCAATGCCAGTATCGACAGTCAACACATCGCTCATCAAT
TTGCTTCGCAACTGGTCGAACATGGTTTGGTGGTCACCAGTGGGCTGGCGCTGGGCATCGATGGTTATGCCCATGATGGC
GCCCTGAAAGCGGGCGGCGAAACCATCGCGGTATTGGGTTCAGGGTTGGGATGTATTTATCCGGCGCGTCATCGCACGTT
GGCGGAGCGGATTATGGCCAGTGGGGCGGTGGTGTCGGAGTTTCGCCCGGATGCCAAACCGCGGCCTGATCACTTTCCGC
GTCGCAATCGTATTATTAGTGGCTTGTCGTTGGGGGTTCTGGTGGTGGAAGCGGCCGAGAAAAGTGGCTCGCTCATCACC
GCGCGTTACGCTGTTGAACAGAGCCGAGAGGTGTTTGTGGTCCCGGGCTCGATTCGTCATCCCAATTGCCATGGCAGTAA
CCAGTTGATTCGGCAAGGCGCGTGTCTGGTTCAGCACATCGACCACATACTCGATGAGGTTGGCCCCATGATGGATTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTTGCTCATATCACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGAAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCCATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.488

98.922

0.628
  dprA Vibrio cholerae strain A1552

61.725

100

0.617
  dprA Glaesserella parasuis strain SC1401

44.415

100

0.45
  dprA Legionella pneumophila strain ERS1305867

42.033

98.113

0.412
  dprA Neisseria meningitidis strain C311

35.872

100

0.394
  dprA Neisseria meningitidis MC58

35.872

100

0.394
  dprA Neisseria gonorrhoeae MS11

34.483

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

33.99

100

0.372

Multiple sequence alignment