Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BHV55_RS19180 Genome accession   NZ_CP049978
Coordinates   3797306..3798085 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. RZ2MS9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3792306..3803085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHV55_RS19155 (BHV55_19155) uppS 3793054..3793830 (-) 777 WP_070756913.1 isoprenyl transferase -
  BHV55_RS19160 (BHV55_19160) frr 3793916..3794473 (-) 558 WP_000531501.1 ribosome recycling factor -
  BHV55_RS19165 (BHV55_19165) pyrH 3794476..3795198 (-) 723 WP_000042668.1 UMP kinase -
  BHV55_RS19170 (BHV55_19170) tsf 3795265..3796152 (-) 888 WP_001018578.1 translation elongation factor Ts -
  BHV55_RS19175 (BHV55_19175) rpsB 3796256..3796957 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  BHV55_RS19180 (BHV55_19180) codY 3797306..3798085 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BHV55_RS19185 (BHV55_19185) hslU 3798163..3799554 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  BHV55_RS19190 (BHV55_19190) hslV 3799577..3800119 (-) 543 WP_048567505.1 ATP-dependent protease proteolytic subunit HslV -
  BHV55_RS19195 (BHV55_19195) xerC 3800162..3801061 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  BHV55_RS19200 (BHV55_19200) trmFO 3801127..3802431 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=429106 BHV55_RS19180 WP_000421290.1 3797306..3798085(-) (codY) [Bacillus sp. RZ2MS9]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=429106 BHV55_RS19180 WP_000421290.1 3797306..3798085(-) (codY) [Bacillus sp. RZ2MS9]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459