Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BHV55_RS19180 Genome accession   NZ_CP049978
Coordinates   3797306..3798085 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. RZ2MS9     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3781860..3836925 3797306..3798085 within 0


Gene organization within MGE regions


Location: 3781860..3836925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHV55_RS19125 (BHV55_19125) rimP 3782762..3783232 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  BHV55_RS19130 (BHV55_19130) - 3783569..3787870 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  BHV55_RS19135 (BHV55_19135) - 3787995..3789695 (-) 1701 WP_000814333.1 proline--tRNA ligase -
  BHV55_RS19140 (BHV55_19140) rseP 3789805..3791061 (-) 1257 WP_001090245.1 RIP metalloprotease RseP -
  BHV55_RS19145 (BHV55_19145) dxr 3791079..3792221 (-) 1143 WP_070756912.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  BHV55_RS19150 (BHV55_19150) cdsA 3792245..3793036 (-) 792 WP_000813594.1 phosphatidate cytidylyltransferase -
  BHV55_RS19155 (BHV55_19155) uppS 3793054..3793830 (-) 777 WP_070756913.1 isoprenyl transferase -
  BHV55_RS19160 (BHV55_19160) frr 3793916..3794473 (-) 558 WP_000531501.1 ribosome recycling factor -
  BHV55_RS19165 (BHV55_19165) pyrH 3794476..3795198 (-) 723 WP_000042668.1 UMP kinase -
  BHV55_RS19170 (BHV55_19170) tsf 3795265..3796152 (-) 888 WP_001018578.1 translation elongation factor Ts -
  BHV55_RS19175 (BHV55_19175) rpsB 3796256..3796957 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  BHV55_RS19180 (BHV55_19180) codY 3797306..3798085 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BHV55_RS19185 (BHV55_19185) hslU 3798163..3799554 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  BHV55_RS19190 (BHV55_19190) hslV 3799577..3800119 (-) 543 WP_048567505.1 ATP-dependent protease proteolytic subunit HslV -
  BHV55_RS19195 (BHV55_19195) xerC 3800162..3801061 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  BHV55_RS19200 (BHV55_19200) trmFO 3801127..3802431 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BHV55_RS19205 (BHV55_19205) topA 3802480..3804558 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  BHV55_RS19210 (BHV55_19210) dprA 3804703..3805572 (-) 870 WP_000818039.1 DNA-processing protein DprA -
  BHV55_RS19215 (BHV55_19215) sucD 3805660..3806562 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  BHV55_RS19220 (BHV55_19220) sucC 3806582..3807742 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  BHV55_RS19225 (BHV55_19225) - 3807937..3808710 (-) 774 WP_001193513.1 ribonuclease HII -
  BHV55_RS19230 (BHV55_19230) ylqF 3808767..3809657 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  BHV55_RS19235 (BHV55_19235) lepB 3809678..3810229 (-) 552 WP_000711851.1 signal peptidase I -
  BHV55_RS19240 (BHV55_19240) rplS 3810331..3810675 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  BHV55_RS19245 (BHV55_19245) trmD 3810822..3811556 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BHV55_RS19250 (BHV55_19250) rimM 3811556..3812071 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  BHV55_RS19255 (BHV55_19255) - 3812192..3812419 (-) 228 WP_000737401.1 KH domain-containing protein -
  BHV55_RS19260 (BHV55_19260) rpsP 3812434..3812706 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  BHV55_RS19265 (BHV55_19265) ffh 3812808..3814157 (-) 1350 WP_000863460.1 signal recognition particle protein -
  BHV55_RS19270 (BHV55_19270) - 3814170..3814502 (-) 333 WP_000891062.1 putative DNA-binding protein -
  BHV55_RS19275 (BHV55_19275) ftsY 3814636..3815625 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  BHV55_RS19280 (BHV55_19280) smc 3815641..3819210 (-) 3570 WP_000478977.1 chromosome segregation protein SMC -
  BHV55_RS19285 (BHV55_19285) rncS 3819357..3820094 (-) 738 WP_001146875.1 ribonuclease III -
  BHV55_RS19290 (BHV55_19290) acpP 3820153..3820386 (-) 234 WP_000786062.1 acyl carrier protein -
  BHV55_RS19295 (BHV55_19295) fabG 3820456..3821196 (-) 741 WP_000911769.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BHV55_RS19300 (BHV55_19300) fabD 3821196..3822140 (-) 945 WP_000515910.1 ACP S-malonyltransferase -
  BHV55_RS19305 (BHV55_19305) plsX 3822155..3823147 (-) 993 WP_000684098.1 phosphate acyltransferase PlsX -
  BHV55_RS19310 (BHV55_19310) fapR 3823144..3823737 (-) 594 WP_000747349.1 transcription factor FapR -
  BHV55_RS19315 (BHV55_19315) recG 3823826..3825874 (-) 2049 WP_001000813.1 ATP-dependent DNA helicase RecG -
  BHV55_RS19320 (BHV55_19320) - 3826165..3827841 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  BHV55_RS19325 (BHV55_19325) - 3827864..3828226 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  BHV55_RS19330 (BHV55_19330) rpmB 3828603..3828791 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  BHV55_RS19335 (BHV55_19335) spoVM 3828865..3828945 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  BHV55_RS19340 (BHV55_19340) - 3829012..3829692 (-) 681 WP_002062149.1 thiamine diphosphokinase -
  BHV55_RS19345 (BHV55_19345) rpe 3829762..3830406 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  BHV55_RS19350 (BHV55_19350) rsgA 3830409..3831290 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  BHV55_RS19355 (BHV55_19355) pknB 3831537..3833510 (-) 1974 WP_058840176.1 Stk1 family PASTA domain-containing Ser/Thr kinase -
  BHV55_RS19360 (BHV55_19360) - 3833519..3834271 (-) 753 WP_070756914.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  BHV55_RS19365 (BHV55_19365) rlmN 3834276..3835364 (-) 1089 WP_000450541.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BHV55_RS19370 (BHV55_19370) rsmB 3835369..3836703 (-) 1335 WP_070756915.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=429106 BHV55_RS19180 WP_000421290.1 3797306..3798085(-) (codY) [Bacillus sp. RZ2MS9]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=429106 BHV55_RS19180 WP_000421290.1 3797306..3798085(-) (codY) [Bacillus sp. RZ2MS9]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459