Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GTCCBUS3UF5_RS13250 Genome accession   NC_016593
Coordinates   2657641..2660007 (-) Length   788 a.a.
NCBI ID   WP_020278388.1    Uniprot ID   -
Organism   Geobacillus thermoleovorans CCB_US3_UF5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2652641..2665007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTCCBUS3UF5_RS13225 (GTCCBUS3UF5_28990) ahpC 2653257..2653820 (-) 564 WP_011232052.1 alkyl hydroperoxide reductase subunit C -
  GTCCBUS3UF5_RS19240 (GTCCBUS3UF5_29000) - 2654055..2654228 (-) 174 WP_014196408.1 hypothetical protein -
  GTCCBUS3UF5_RS13235 (GTCCBUS3UF5_29010) dtd 2654309..2654767 (-) 459 WP_011232054.1 D-aminoacyl-tRNA deacylase -
  GTCCBUS3UF5_RS13240 (GTCCBUS3UF5_29020) - 2654791..2656989 (-) 2199 WP_011232055.1 RelA/SpoT family protein -
  GTCCBUS3UF5_RS13245 (GTCCBUS3UF5_29030) - 2657138..2657650 (-) 513 WP_013144641.1 adenine phosphoribosyltransferase -
  GTCCBUS3UF5_RS13250 (GTCCBUS3UF5_29040) recJ 2657641..2660007 (-) 2367 WP_020278388.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GTCCBUS3UF5_RS13255 (GTCCBUS3UF5_29050) - 2660065..2660973 (-) 909 WP_014196411.1 cation diffusion facilitator family transporter -
  GTCCBUS3UF5_RS13260 (GTCCBUS3UF5_29060) secDF 2661110..2663362 (-) 2253 WP_011232059.1 protein translocase subunit SecDF -
  GTCCBUS3UF5_RS13265 (GTCCBUS3UF5_29080) - 2663475..2663762 (-) 288 WP_013524218.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86815.14 Da        Isoelectric Point: 5.8104

>NTDB_id=42894 GTCCBUS3UF5_RS13250 WP_020278388.1 2657641..2660007(-) (recJ) [Geobacillus thermoleovorans CCB_US3_UF5]
MLKAKTRWEVERLDEQAVRRLAEEAGVTPLLARLLVRRGVQTASEAAAFLNPLRQPFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GMDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRIDAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDREKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLSLDDVEELRQRLNDIAAETLSEDDFTPPTFIDASCSIAELTLSAARSLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCETGQRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLGSGRPARIYAVFAQPEAQFFRTFPTREHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=42894 GTCCBUS3UF5_RS13250 WP_020278388.1 2657641..2660007(-) (recJ) [Geobacillus thermoleovorans CCB_US3_UF5]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGGCGGTGAGGCGGCTGGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCAGACGGCCTCGGAGGCGGCGGCGTTTCTCAATCCGCTTC
GCCAACCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGAGCGATTCAGCGTCTAAAGCGGGCGATCGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGATGGATGTCATCGTAACGGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATTCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTGATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTTGCTTCTAAGCTTGTCGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCCATCGACCGGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGTCGCTTGA
TGATGTCGAAGAATTACGGCAACGGCTGAACGACATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATTGATGCTTCCTGTTCGATTGCTGAGTTGACGCTGTCGGCCGCCCGCAGCCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCCGTTGAAACCATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTTGGGCCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCGCAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGCTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTCCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGTGAAACTGGGCAGCGCCCGGACGTGGCGCCATTTCGCGGGGAGCTTCATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCCTTGCTGTCGGCGCTTCTTGGCAGCGGGCGGCCGGCGCGCATTTACGCGGTGTTTGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCCTTTTTGCATCAACACCGTTCGTTTCCGCTCGCCAAGC
GCGGTGGTGAGCTGGCCCGCGCCCGCGGTTGGACGGAAGAGACGGTTCATTTTATGGCGAAAGTATTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCGCTCGTTCATCAGCCGGCGAAGCGCGATTTGCACGAATCGCCGACGTACCG
CCGGCGGCGGGACGAGCTCGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.888

98.858

0.523

Multiple sequence alignment