Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IF777_RS08350 Genome accession   NZ_CP062399
Coordinates   1709609..1710883 (+) Length   424 a.a.
NCBI ID   WP_045173051.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1704609..1715883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF777_RS08320 (IF777_08280) mnmA 1704811..1705929 (-) 1119 WP_240053222.1 tRNA 2-thiouridine(34) synthase MnmA -
  IF777_RS08325 (IF777_08285) - 1705930..1707072 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  IF777_RS08330 (IF777_08290) - 1707384..1708397 (+) 1014 WP_000985872.1 LLM class flavin-dependent oxidoreductase -
  IF777_RS08335 (IF777_08295) - 1708634..1708780 (-) 147 WP_000009238.1 SAS049 family protein -
  IF777_RS08340 (IF777_08300) - 1708820..1709002 (-) 183 WP_000752909.1 CsbD family protein -
  IF777_RS08345 (IF777_08305) - 1709102..1709524 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  IF777_RS08350 (IF777_08310) rarA 1709609..1710883 (+) 1275 WP_045173051.1 replication-associated recombination protein A Machinery gene
  IF777_RS08355 (IF777_08315) - 1711044..1711817 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  IF777_RS08360 (IF777_08320) - 1711817..1711945 (-) 129 WP_001790559.1 hypothetical protein -
  IF777_RS08370 (IF777_08330) aspS 1712278..1714044 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  IF777_RS08375 (IF777_08335) hisS 1714060..1715322 (-) 1263 WP_045173052.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47266.85 Da        Isoelectric Point: 8.3539

>NTDB_id=428925 IF777_RS08350 WP_045173051.1 1709609..1710883(+) (rarA) [Staphylococcus aureus strain NAS_OP_143]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQLKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=428925 IF777_RS08350 WP_045173051.1 1709609..1710883(+) (rarA) [Staphylococcus aureus strain NAS_OP_143]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACTCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(174-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684